Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 82702926

GI number: 82702926

Start: 2061303

End: 2062661

Strand: Reverse

Name: radA [H]

Synonym: Nmul_A1803

Alternate gene names: 82702926

Gene position: 2062661-2061303 (Counterclockwise)

Preceding gene: 82702927

Following gene: 82702924

Centisome position: 64.78

GC content: 58.43

Gene sequence:

>1359_bases
ATGGCTAAATCCAAATCTACTTATTCCTGCACCGAATGCGGCGGCCAGACTTTGAAATGGCAGGGTCAATGCCCGCATTG
CCAGGCATGGAACACCCTTGTCGAGGCGATGAGCGAAAAGGCGGCAGCGCGATTCACTCCCGTCTCAGAAAGCAGGGAAG
TTCAGAGCTTGAGTGAAGTGGAAGCGGAGGAAGAGCAGCGTTATTCGACAGGTTTGCTCGAGTTTGACCGGGTGCTGGGC
GGAGGCCTTGTGCAGGGTGGTGTGGTATTGCTGGGGGGCGATCCGGGAATCGGCAAATCCACGCTGCTGCTCCAGGCATT
ATGCAATATGTCTTTGCTGCCGCTCGCGAGAAACGTGTTGTACGTGAGCGGTGAAGAGTCGGCCAGGCAGGTGGCGATGC
GCGCCAAACGAATGGGGGTCGATGCAAAGGCGTTGCATTTGCTGGCGGAAATTCGCCTGGAGCGAATCCAGGAAGTGCTG
GCCGAACGCAAGCCTGACGTGGCCGTCATCGATTCCATTCAGACAGTTTATTCCGACGCGCTGCAATCCGCTCCCGGTTC
CGTCGCCCAGGTACGCGAGTGCGCCGCGCAATTGACCCGACTCGCCAAGGCCAGCGGTACCGGCATGATTCTGGTGGGCC
ATGTGACGAAGGAGGGTGCATTGGCCGGTCCGCGCGTACTGGAGCACATGGTGGATACGGTGCTCTATTTCGAGGGCGAC
ACGCATTCGAGTTTTCGCCTGATCCGCGCCTTCAAGAACCGGTTTGGGGCAGTGAATGAACTGGGCGTTTTTGCGATGAC
TGAAAAGGGTTTGCGGGAGGTAAGCAATCCCTCGGCCTTGTTTCTTTCTCATCATGGCGGCCAGGTCCCGGGTTCCTGCA
TCATGGTGACACAGGAAGGCACCCGGCCGCTTCTCGTTGAAATCCAGGCCCTGGTGGATGAAGCGCACTCGCCTAACGCG
AGAAGGTTGAGCGTTGGACTGGAGCAGAACCGGCTTGCCATGTTGCTGGCGGTTTTGCACCGCCACGCAGGCATCGCCTG
TTTCGATCAGGATGTGTTCGTGAATGCGGTGGGGGGCGTGAAAATTACCGAACCGGGTGCCGATTTAGCTGTATTGCTGG
CAATCGTTTCCTCACTCAAGAACCGGCCGCTGCCGGAAAAAACGGTGGTGTTCGGGGAAGTGGGTCTGGCGGGAGAAGTG
CGCCCGGTCCAGCGCGGCCTGGAAAGACTGAGAGAAGCGGCCAAGCTGGGTTTTGTGCAAGCCATTGTTCCCAAGGCCAA
CAAACCGAAAGCGACGCCTCCCGGCATCGAAATCATTGCGGTGGAACGGGTGGAGGAGGCGGTTGCAAGAATGCGATGA

Upstream 100 bases:

>100_bases
CTGCTGTCTGCCATATATCTATGACGTGGTTCGTGGAAATGAAATATATTACTTCGATGATTGAGCTTTCAGGGCGATAA
CAAATTCCGGTTTTCCATAC

Downstream 100 bases:

>100_bases
AGAACCCCACGAAAGATTCGCTTTCAGGAATATCTGTTACTTTATCTCAGATAGGCTGACATGATTCCCGGTTTCCGTCA
CAAGGATCTGAGAAGGCTTC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MAKSKSTYSCTECGGQTLKWQGQCPHCQAWNTLVEAMSEKAAARFTPVSESREVQSLSEVEAEEEQRYSTGLLEFDRVLG
GGLVQGGVVLLGGDPGIGKSTLLLQALCNMSLLPLARNVLYVSGEESARQVAMRAKRMGVDAKALHLLAEIRLERIQEVL
AERKPDVAVIDSIQTVYSDALQSAPGSVAQVRECAAQLTRLAKASGTGMILVGHVTKEGALAGPRVLEHMVDTVLYFEGD
THSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHGGQVPGSCIMVTQEGTRPLLVEIQALVDEAHSPNA
RRLSVGLEQNRLAMLLAVLHRHAGIACFDQDVFVNAVGGVKITEPGADLAVLLAIVSSLKNRPLPEKTVVFGEVGLAGEV
RPVQRGLERLREAAKLGFVQAIVPKANKPKATPPGIEIIAVERVEEAVARMR

Sequences:

>Translated_452_residues
MAKSKSTYSCTECGGQTLKWQGQCPHCQAWNTLVEAMSEKAAARFTPVSESREVQSLSEVEAEEEQRYSTGLLEFDRVLG
GGLVQGGVVLLGGDPGIGKSTLLLQALCNMSLLPLARNVLYVSGEESARQVAMRAKRMGVDAKALHLLAEIRLERIQEVL
AERKPDVAVIDSIQTVYSDALQSAPGSVAQVRECAAQLTRLAKASGTGMILVGHVTKEGALAGPRVLEHMVDTVLYFEGD
THSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHGGQVPGSCIMVTQEGTRPLLVEIQALVDEAHSPNA
RRLSVGLEQNRLAMLLAVLHRHAGIACFDQDVFVNAVGGVKITEPGADLAVLLAIVSSLKNRPLPEKTVVFGEVGLAGEV
RPVQRGLERLREAAKLGFVQAIVPKANKPKATPPGIEIIAVERVEEAVARMR
>Mature_451_residues
AKSKSTYSCTECGGQTLKWQGQCPHCQAWNTLVEAMSEKAAARFTPVSESREVQSLSEVEAEEEQRYSTGLLEFDRVLGG
GLVQGGVVLLGGDPGIGKSTLLLQALCNMSLLPLARNVLYVSGEESARQVAMRAKRMGVDAKALHLLAEIRLERIQEVLA
ERKPDVAVIDSIQTVYSDALQSAPGSVAQVRECAAQLTRLAKASGTGMILVGHVTKEGALAGPRVLEHMVDTVLYFEGDT
HSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHGGQVPGSCIMVTQEGTRPLLVEIQALVDEAHSPNAR
RLSVGLEQNRLAMLLAVLHRHAGIACFDQDVFVNAVGGVKITEPGADLAVLLAIVSSLKNRPLPEKTVVFGEVGLAGEVR
PVQRGLERLREAAKLGFVQAIVPKANKPKATPPGIEIIAVERVEEAVARMR

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=459, Percent_Identity=57.0806100217865, Blast_Score=512, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 48617; Mature: 48486

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSKSTYSCTECGGQTLKWQGQCPHCQAWNTLVEAMSEKAAARFTPVSESREVQSLSEV
CCCCCCCCCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
EAEEEQRYSTGLLEFDRVLGGGLVQGGVVLLGGDPGIGKSTLLLQALCNMSLLPLARNVL
HHHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHCCHHHHHHCCEE
YVSGEESARQVAMRAKRMGVDAKALHLLAEIRLERIQEVLAERKPDVAVIDSIQTVYSDA
EECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LQSAPGSVAQVRECAAQLTRLAKASGTGMILVGHVTKEGALAGPRVLEHMVDTVLYFEGD
HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHEEECCC
THSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHGGQVPGSCIMVTQEG
CCHHHHHHHHHHHHCCCHHHCCHHHCCHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCC
TRPLLVEIQALVDEAHSPNARRLSVGLEQNRLAMLLAVLHRHAGIACFDQDVFVNAVGGV
CCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEECCE
KITEPGADLAVLLAIVSSLKNRPLPEKTVVFGEVGLAGEVRPVQRGLERLREAAKLGFVQ
EEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
AIVPKANKPKATPPGIEIIAVERVEEAVARMR
HHCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
>Mature Secondary Structure 
AKSKSTYSCTECGGQTLKWQGQCPHCQAWNTLVEAMSEKAAARFTPVSESREVQSLSEV
CCCCCCCCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
EAEEEQRYSTGLLEFDRVLGGGLVQGGVVLLGGDPGIGKSTLLLQALCNMSLLPLARNVL
HHHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHHHCCHHHHHHCCEE
YVSGEESARQVAMRAKRMGVDAKALHLLAEIRLERIQEVLAERKPDVAVIDSIQTVYSDA
EECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LQSAPGSVAQVRECAAQLTRLAKASGTGMILVGHVTKEGALAGPRVLEHMVDTVLYFEGD
HHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHEEECCC
THSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHGGQVPGSCIMVTQEG
CCHHHHHHHHHHHHCCCHHHCCHHHCCHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCC
TRPLLVEIQALVDEAHSPNARRLSVGLEQNRLAMLLAVLHRHAGIACFDQDVFVNAVGGV
CCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCEEEEECCE
KITEPGADLAVLLAIVSSLKNRPLPEKTVVFGEVGLAGEVRPVQRGLERLREAAKLGFVQ
EEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
AIVPKANKPKATPPGIEIIAVERVEEAVARMR
HHCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]