Click here to switch to the map view.

The map label for this gene is rfaQ [H]

Identifier: 82702904

GI number: 82702904

Start: 2034134

End: 2035276

Strand: Direct

Name: rfaQ [H]

Synonym: Nmul_A1781

Alternate gene names: 82702904

Gene position: 2034134-2035276 (Clockwise)

Preceding gene: 82702903

Following gene: 82702907

Centisome position: 63.88

GC content: 58.36

Gene sequence:

>1143_bases
TTGGCAGCACGTAATTTCCCCCCCGTTCTCCCTTTCTCACCCCGCAAAATCGCGGTTCTCCATGCCAAGGCGGTGGGTGA
CTTTATCGTCATCCTGCCCGCCCTGGATGCGATTAAACGGACATATCCCGAGGCAGAACTCATCCTGCTCGCCAAGCCGT
GGGTAAAGGAATTCTTCTCCGGCCGCCCGTCGCCGGTTGACCGTGTTCTCAGCCTTCCCCCACTTGCCGGTGTCAATGAT
CCGGTTGAGTCCAAAGGCCGCGTTCCCTCCACAGGCAGCGGTGTCTACCCTGTCGAAGTAGAACTGTTCTGCCAAGCGAT
GCAAGGCGAGAAGCTCGATGTCGTCATTCATATGCAAGGGGATGGTAAATCCGTCAATCCCTTCATCAATAAATTTGCCG
CCCGCGTGACGGCAGGCATGTGCAACCCGCCTGCCGAATCCCTCGACCGTTCCATTCCCTATGTGCATTACCAGAGCGAG
GTTCTGCGCAATCTCGAAGTGGCCTCCTTAATTGGCGCTCGTACCACGAGTACCGGATTCGAACCGCGCATCGAGGTGAC
GGAATCCGACGAACAGGAGACAGAATCGGTCCGCCAGACGATCAAGGGCAAACCCTATGTCGTTATCCACCCGGGCGCGG
ATGATATCCGCAGGGTATGGCCTGCAGTCAGGTTTGCCGAGGCCGCAGATTGCCTGCTCGAAAAAGGATATGCAGTTGTC
GTGACAGGAACGCCGAAAGAAGAAGAGCGCGTGGCGACTGTCATTCGGGCCATGAGTCGGCCTGCGATTCCCTGTACCCG
ACTTGGCCTGTGCGGTCTGGCTGCCCTCTTACAGCATAGCGCGCTCGTCATCAGCAACGATACCGGCCCGCTCCATCTGG
CACGCGCGGTGGGCGCACGTACAGTGGGAATTTACTGGGCCCCCAACATCCTCAACTGGGGTCCGCTCAGCCGCGACCGG
CACCGGCTCGCGATCGGTTGGCAGCTTGAATGTCCCCAATGCGGCATCAGGCCTGTTTCGCCCTGGCCGTTTCAGCCGCA
GACATCCGACTGCAGTCATCCGTACTCATTCGTGGAAAGTGTACCGGTTGCAGAGGTTCTTGCATTGGCCACTGAATTAT
TGGGCCTGACGACTGAGCATTGA

Upstream 100 bases:

>100_bases
AGATAAAGTCCGCGAGAATTTACGTCTCCGAAGGATGAAACGTGCAGAGGCAATGAGACGATGCCGGGAATAGAGAACAA
TAATAACTTTTTTACTGACA

Downstream 100 bases:

>100_bases
GCCCGAACACTAAGCCAGCGTTTTTCAGTGAGCATTCCGAACAAGATTGCTGACGACTCTTTGCCAGTCGTTGGCAAACC
GTTGGATGCCGAATCGGCGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MAARNFPPVLPFSPRKIAVLHAKAVGDFIVILPALDAIKRTYPEAELILLAKPWVKEFFSGRPSPVDRVLSLPPLAGVND
PVESKGRVPSTGSGVYPVEVELFCQAMQGEKLDVVIHMQGDGKSVNPFINKFAARVTAGMCNPPAESLDRSIPYVHYQSE
VLRNLEVASLIGARTTSTGFEPRIEVTESDEQETESVRQTIKGKPYVVIHPGADDIRRVWPAVRFAEAADCLLEKGYAVV
VTGTPKEEERVATVIRAMSRPAIPCTRLGLCGLAALLQHSALVISNDTGPLHLARAVGARTVGIYWAPNILNWGPLSRDR
HRLAIGWQLECPQCGIRPVSPWPFQPQTSDCSHPYSFVESVPVAEVLALATELLGLTTEH

Sequences:

>Translated_380_residues
MAARNFPPVLPFSPRKIAVLHAKAVGDFIVILPALDAIKRTYPEAELILLAKPWVKEFFSGRPSPVDRVLSLPPLAGVND
PVESKGRVPSTGSGVYPVEVELFCQAMQGEKLDVVIHMQGDGKSVNPFINKFAARVTAGMCNPPAESLDRSIPYVHYQSE
VLRNLEVASLIGARTTSTGFEPRIEVTESDEQETESVRQTIKGKPYVVIHPGADDIRRVWPAVRFAEAADCLLEKGYAVV
VTGTPKEEERVATVIRAMSRPAIPCTRLGLCGLAALLQHSALVISNDTGPLHLARAVGARTVGIYWAPNILNWGPLSRDR
HRLAIGWQLECPQCGIRPVSPWPFQPQTSDCSHPYSFVESVPVAEVLALATELLGLTTEH
>Mature_379_residues
AARNFPPVLPFSPRKIAVLHAKAVGDFIVILPALDAIKRTYPEAELILLAKPWVKEFFSGRPSPVDRVLSLPPLAGVNDP
VESKGRVPSTGSGVYPVEVELFCQAMQGEKLDVVIHMQGDGKSVNPFINKFAARVTAGMCNPPAESLDRSIPYVHYQSEV
LRNLEVASLIGARTTSTGFEPRIEVTESDEQETESVRQTIKGKPYVVIHPGADDIRRVWPAVRFAEAADCLLEKGYAVVV
TGTPKEEERVATVIRAMSRPAIPCTRLGLCGLAALLQHSALVISNDTGPLHLARAVGARTVGIYWAPNILNWGPLSRDRH
RLAIGWQLECPQCGIRPVSPWPFQPQTSDCSHPYSFVESVPVAEVLALATELLGLTTEH

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 41454; Mature: 41323

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARNFPPVLPFSPRKIAVLHAKAVGDFIVILPALDAIKRTYPEAELILLAKPWVKEFFS
CCCCCCCCCCCCCCCEEEEEEECHHCCEEEEHHHHHHHHHHCCCCEEEEEECHHHHHHHC
GRPSPVDRVLSLPPLAGVNDPVESKGRVPSTGSGVYPVEVELFCQAMQGEKLDVVIHMQG
CCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECC
DGKSVNPFINKFAARVTAGMCNPPAESLDRSIPYVHYQSEVLRNLEVASLIGARTTSTGF
CCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC
EPRIEVTESDEQETESVRQTIKGKPYVVIHPGADDIRRVWPAVRFAEAADCLLEKGYAVV
CCEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
VTGTPKEEERVATVIRAMSRPAIPCTRLGLCGLAALLQHSALVISNDTGPLHLARAVGAR
EECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCE
TVGIYWAPNILNWGPLSRDRHRLAIGWQLECPQCGIRPVSPWPFQPQTSDCSHPYSFVES
EEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
VPVAEVLALATELLGLTTEH
CCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AARNFPPVLPFSPRKIAVLHAKAVGDFIVILPALDAIKRTYPEAELILLAKPWVKEFFS
CCCCCCCCCCCCCCEEEEEEECHHCCEEEEHHHHHHHHHHCCCCEEEEEECHHHHHHHC
GRPSPVDRVLSLPPLAGVNDPVESKGRVPSTGSGVYPVEVELFCQAMQGEKLDVVIHMQG
CCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECC
DGKSVNPFINKFAARVTAGMCNPPAESLDRSIPYVHYQSEVLRNLEVASLIGARTTSTGF
CCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC
EPRIEVTESDEQETESVRQTIKGKPYVVIHPGADDIRRVWPAVRFAEAADCLLEKGYAVV
CCEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
VTGTPKEEERVATVIRAMSRPAIPCTRLGLCGLAALLQHSALVISNDTGPLHLARAVGAR
EECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCE
TVGIYWAPNILNWGPLSRDRHRLAIGWQLECPQCGIRPVSPWPFQPQTSDCSHPYSFVES
EEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
VPVAEVLALATELLGLTTEH
CCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA