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The map label for this gene is ygiD [H]

Identifier: 82702828

GI number: 82702828

Start: 1944539

End: 1945276

Strand: Direct

Name: ygiD [H]

Synonym: Nmul_A1704

Alternate gene names: 82702828

Gene position: 1944539-1945276 (Clockwise)

Preceding gene: 82702827

Following gene: 82702830

Centisome position: 61.07

GC content: 52.03

Gene sequence:

>738_bases
ATGAATGCCCTGTCCTGCAACGCGTATACTGAAGCGTGGTCCGCTATTGGCAAAAGCCTCCCGGCCAAACCTAAAGCTAT
TCTTTGTATCTCCGCGCATTGGTACATACCGAAAACAGCGGTAACTGCCCAAGAAAACCCCCCCACGATTCATGACTTCG
GCGGATTCCCGCAGGAGCTGTATCGAGTCCAGTATCCCGCCCCCGGATCCCTGGAACTTGCAGCGGAAGTCGCTGATTTG
CTCCTGCCACATGCTGTCATGGACACAACCTGGGGGCTTGATCATGGTACCTGGTCGGTCCTCGTCCATATGTTTCCGGA
TGCGGATATTCCCGTCATCCAATTGAGTATAGATGAAACCAAAGAGGCTGCATGGCATTATGAGACGGCGCGAAACCTGG
CACCGTTGCGGGATCGGGGTGTCCTTATTCTCGGAAGCGGCAATATCGTCCATAATCTGCATACCTATTCATGGGGAAAG
CATGATGCAGACCCTTATGACTGGGCTCTGAGGTTCGAAAAAATGGTGCGCACGGCGTTGCGATCGGACAATGTCGAATC
CCTCATCGCATATGAAAAACTGGGAAAGGACGCGTTGCTATCGGTGCCAACTCCTGACCATTACCTTCCGTTTCTCTATA
TTCTTGCTCAGAGGCAGCACAACGAGGAAATCGGTTTTCCTGTGGAAGGATTTGATGACGGATCAATTTCCATGACGGCA
GTCCAGATCGGGGTATGA

Upstream 100 bases:

>100_bases
CAATAGCCCGGCAACGCTCCTCCAACTTTCCCCACTTCCATAGCTCCTGCACAATCTGATGCCCGCAATGCCCGCAGTCT
TCGTAGGTCATGGGAATCCT

Downstream 100 bases:

>100_bases
GGCCTCATCTGAGGCAAAGATTGGAACATCGCGTATCTCCACGAAAACTCTTCTCCCTCCTCAAGTTTCCTATGTTTCCC
TTATCTCTTTTAACCTGTGG

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MNALSCNAYTEAWSAIGKSLPAKPKAILCISAHWYIPKTAVTAQENPPTIHDFGGFPQELYRVQYPAPGSLELAAEVADL
LLPHAVMDTTWGLDHGTWSVLVHMFPDADIPVIQLSIDETKEAAWHYETARNLAPLRDRGVLILGSGNIVHNLHTYSWGK
HDADPYDWALRFEKMVRTALRSDNVESLIAYEKLGKDALLSVPTPDHYLPFLYILAQRQHNEEIGFPVEGFDDGSISMTA
VQIGV

Sequences:

>Translated_245_residues
MNALSCNAYTEAWSAIGKSLPAKPKAILCISAHWYIPKTAVTAQENPPTIHDFGGFPQELYRVQYPAPGSLELAAEVADL
LLPHAVMDTTWGLDHGTWSVLVHMFPDADIPVIQLSIDETKEAAWHYETARNLAPLRDRGVLILGSGNIVHNLHTYSWGK
HDADPYDWALRFEKMVRTALRSDNVESLIAYEKLGKDALLSVPTPDHYLPFLYILAQRQHNEEIGFPVEGFDDGSISMTA
VQIGV
>Mature_245_residues
MNALSCNAYTEAWSAIGKSLPAKPKAILCISAHWYIPKTAVTAQENPPTIHDFGGFPQELYRVQYPAPGSLELAAEVADL
LLPHAVMDTTWGLDHGTWSVLVHMFPDADIPVIQLSIDETKEAAWHYETARNLAPLRDRGVLILGSGNIVHNLHTYSWGK
HDADPYDWALRFEKMVRTALRSDNVESLIAYEKLGKDALLSVPTPDHYLPFLYILAQRQHNEEIGFPVEGFDDGSISMTA
VQIGV

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=249, Percent_Identity=51.4056224899598, Blast_Score=247, Evalue=4e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 27231; Mature: 27231

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALSCNAYTEAWSAIGKSLPAKPKAILCISAHWYIPKTAVTAQENPPTIHDFGGFPQEL
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECEECCCEEEECCCCCCEECCCCCCHHHH
YRVQYPAPGSLELAAEVADLLLPHAVMDTTWGLDHGTWSVLVHMFPDADIPVIQLSIDET
HEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEEECCCC
KEAAWHYETARNLAPLRDRGVLILGSGNIVHNLHTYSWGKHDADPYDWALRFEKMVRTAL
HHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
RSDNVESLIAYEKLGKDALLSVPTPDHYLPFLYILAQRQHNEEIGFPVEGFDDGSISMTA
HCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
VQIGV
EEECC
>Mature Secondary Structure
MNALSCNAYTEAWSAIGKSLPAKPKAILCISAHWYIPKTAVTAQENPPTIHDFGGFPQEL
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECEECCCEEEECCCCCCEECCCCCCHHHH
YRVQYPAPGSLELAAEVADLLLPHAVMDTTWGLDHGTWSVLVHMFPDADIPVIQLSIDET
HEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEEECCCC
KEAAWHYETARNLAPLRDRGVLILGSGNIVHNLHTYSWGKHDADPYDWALRFEKMVRTAL
HHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
RSDNVESLIAYEKLGKDALLSVPTPDHYLPFLYILAQRQHNEEIGFPVEGFDDGSISMTA
HCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
VQIGV
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]