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The map label for this gene is yafC [H]

Identifier: 82702601

GI number: 82702601

Start: 1680966

End: 1681871

Strand: Direct

Name: yafC [H]

Synonym: Nmul_A1472

Alternate gene names: 82702601

Gene position: 1680966-1681871 (Clockwise)

Preceding gene: 82702595

Following gene: 82702603

Centisome position: 52.79

GC content: 55.85

Gene sequence:

>906_bases
GTGCAAGATTTGAATGATCTTTACTACTACGTCCAGGCAGTCGATCATGGCGGCTTTGCCCAGGCAGGCCGAGCGCTGGG
AATGCCGAAATCGAAGCTCAGCCGTCGCATCGCAACGTTGGAAGAGCGGCTAGGGGTGCGCCTCATCCAACGTTCATCAC
GTCGCTTTACAGTGACTGAAGTCGGACAAACCTATTACGAGCACTGCAAAGCGATGCTCGTGGAAGCAGAGGCTGCTCAG
GAAGCAATAGAGGCAATGCAAGCGGAACCTCGGGGTGTCGTCCGTCTAACATGTCCGGTGGCGCTGCTGCATGTGAATGT
CGGGGTGATGCTGGCCGACTTTATGGTGCGTTATCCGCATATCACGCTCCATCTCGAGGCCACCAATCGGCGTGTGGATG
TGCTGAGCGAAGCAGTAGATGTAGCCATTCGCGTGCGACCGCCACCCTTGCAGGATAGTGATCTGGTCATGCGTGTCCTG
GCTGATCGGGGACAGTGTCTGGTAGGAAGTCAGGCGCTTGTATGGCACTTCGGTTTTCCTCGCACCCCCGGCGAGTTGAG
CAACTGGCCCAGCCTCGGACTGGGAACGCCTCAACAAATCCATAAATGGGTACTGCACGGGCCGAACGGTGCTCAGGCAA
CGCTTCATCACATGCCGCGTTTAATCACCACCGATATGATTACCTTAAGAAATGCGGCATTGGCCGGGGTGGGAATGGTA
CAACTGCCTGTTCTGATGGTACGTGATCATTTGGCAGCAGGTTCGCTGGTCAGGCTGGTGCCTGATTGGACTCCTCACCG
GGAAATTGTCCATGCTGTATTTCCATCTCGGCGCGGCCTTCTGCCATCGGTGCGAACGCTCATTGATTTTCTCGCAGAGC
GTTTTCGCTTACTGCATGAGGAGTGA

Upstream 100 bases:

>100_bases
TGCTTAATGGAATGTAGTAAAAGTATAGATTGGAAACCATCACGTATGTAGACTGCTAAAATAGCTAGGAGAGTTCTATT
TTTAGGACGATAAGGTTGCA

Downstream 100 bases:

>100_bases
GTGCAATATTCGCGGAAAGGGGTTTTCCCCTCCCTTTCCCGCATATGCAAGAAGCAGAAGCATAGGGTTCTTATAATGCC
ACCCTGATAATCGGCTTGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MQDLNDLYYYVQAVDHGGFAQAGRALGMPKSKLSRRIATLEERLGVRLIQRSSRRFTVTEVGQTYYEHCKAMLVEAEAAQ
EAIEAMQAEPRGVVRLTCPVALLHVNVGVMLADFMVRYPHITLHLEATNRRVDVLSEAVDVAIRVRPPPLQDSDLVMRVL
ADRGQCLVGSQALVWHFGFPRTPGELSNWPSLGLGTPQQIHKWVLHGPNGAQATLHHMPRLITTDMITLRNAALAGVGMV
QLPVLMVRDHLAAGSLVRLVPDWTPHREIVHAVFPSRRGLLPSVRTLIDFLAERFRLLHEE

Sequences:

>Translated_301_residues
MQDLNDLYYYVQAVDHGGFAQAGRALGMPKSKLSRRIATLEERLGVRLIQRSSRRFTVTEVGQTYYEHCKAMLVEAEAAQ
EAIEAMQAEPRGVVRLTCPVALLHVNVGVMLADFMVRYPHITLHLEATNRRVDVLSEAVDVAIRVRPPPLQDSDLVMRVL
ADRGQCLVGSQALVWHFGFPRTPGELSNWPSLGLGTPQQIHKWVLHGPNGAQATLHHMPRLITTDMITLRNAALAGVGMV
QLPVLMVRDHLAAGSLVRLVPDWTPHREIVHAVFPSRRGLLPSVRTLIDFLAERFRLLHEE
>Mature_301_residues
MQDLNDLYYYVQAVDHGGFAQAGRALGMPKSKLSRRIATLEERLGVRLIQRSSRRFTVTEVGQTYYEHCKAMLVEAEAAQ
EAIEAMQAEPRGVVRLTCPVALLHVNVGVMLADFMVRYPHITLHLEATNRRVDVLSEAVDVAIRVRPPPLQDSDLVMRVL
ADRGQCLVGSQALVWHFGFPRTPGELSNWPSLGLGTPQQIHKWVLHGPNGAQATLHHMPRLITTDMITLRNAALAGVGMV
QLPVLMVRDHLAAGSLVRLVPDWTPHREIVHAVFPSRRGLLPSVRTLIDFLAERFRLLHEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=29.8969072164948, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=27.7966101694915, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=26.578073089701, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=27.6450511945392, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=22.2222222222222, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=25.9259259259259, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=24.7422680412371, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI157672245, Length=161, Percent_Identity=31.6770186335404, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789173, Length=140, Percent_Identity=32.1428571428571, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=146, Percent_Identity=30.1369863013699, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082132, Length=301, Percent_Identity=23.5880398671096, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33677; Mature: 33677

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLNDLYYYVQAVDHGGFAQAGRALGMPKSKLSRRIATLEERLGVRLIQRSSRRFTVTE
CCCHHHHHHHHHHHCCCCHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
VGQTYYEHCKAMLVEAEAAQEAIEAMQAEPRGVVRLTCPVALLHVNVGVMLADFMVRYPH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHEEHHHHHHHHHHHHHHCCC
ITLHLEATNRRVDVLSEAVDVAIRVRPPPLQDSDLVMRVLADRGQCLVGSQALVWHFGFP
EEEEEECCCCHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHCCCCEEECCCEEEEECCCC
RTPGELSNWPSLGLGTPQQIHKWVLHGPNGAQATLHHMPRLITTDMITLRNAALAGVGMV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCHHH
QLPVLMVRDHLAAGSLVRLVPDWTPHREIVHAVFPSRRGLLPSVRTLIDFLAERFRLLHE
HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
E
C
>Mature Secondary Structure
MQDLNDLYYYVQAVDHGGFAQAGRALGMPKSKLSRRIATLEERLGVRLIQRSSRRFTVTE
CCCHHHHHHHHHHHCCCCHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
VGQTYYEHCKAMLVEAEAAQEAIEAMQAEPRGVVRLTCPVALLHVNVGVMLADFMVRYPH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHEEHHHHHHHHHHHHHHCCC
ITLHLEATNRRVDVLSEAVDVAIRVRPPPLQDSDLVMRVLADRGQCLVGSQALVWHFGFP
EEEEEECCCCHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHCCCCEEECCCEEEEECCCC
RTPGELSNWPSLGLGTPQQIHKWVLHGPNGAQATLHHMPRLITTDMITLRNAALAGVGMV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCHHH
QLPVLMVRDHLAAGSLVRLVPDWTPHREIVHAVFPSRRGLLPSVRTLIDFLAERFRLLHE
HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]