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The map label for this gene is flhC [H]

Identifier: 82702435

GI number: 82702435

Start: 1496442

End: 1496987

Strand: Direct

Name: flhC [H]

Synonym: Nmul_A1306

Alternate gene names: 82702435

Gene position: 1496442-1496987 (Clockwise)

Preceding gene: 82702434

Following gene: 82702436

Centisome position: 47.0

GC content: 52.75

Gene sequence:

>546_bases
ATGCGCAAGAAAAGCATTGTGTCGGAAGCCAACGAGATAAAGACAGCGATCGAGTTGATTCGCCTGGGTGCGCGTCTTCA
GTTACTGGAGTCTGAAACCACCCTGAGCCGCGAGCGGCTGATCAAACTATATAAGGAACTGAAAGGCGTTTCTCCGCCCA
AGGGAATGCTGCCGTTTTCCACCGATTGGTTTCTTACGTGGCAGCCCAATATACATTCCTCCGTATTTGCTGACATTTAT
CGCTATCTGATTGCTCATGGCGATTGCCGGGGAATCAGCGCAATCATCAAGAGCTATAAGCTTTATCTGGAGCATTGCCA
AGTCTGCGAGATGGAGCCGATACTCAGCCTGACCCGGGCATGGACGCTGGTGCGCTTCTTTGAAAGCAAACTGATGCAGA
CAACTGCATGCAATCAATGCGGCGGCCATTTCGTAGTGCACGCCAACGATCTCCATCACCGCTATGTTTGCGGGCTGTGC
CACATGCCTTCCCGAGCCGGCAAAACCAACAAGGCGCGGACAGCGATGGTGGCAGAGGCAGCTTAA

Upstream 100 bases:

>100_bases
CGGAAGAAATTTCATAAAGTATTTCCTGAAATGTTTGCCGAGAATTTCCTGGGGGAAGCGAACGCCCGGGTTTGAGGAAA
AGGAGAAAGGGGAATCAGCT

Downstream 100 bases:

>100_bases
GCCGTAGCACCCAGTACTCTCGCACTCGCGCAGATCCTTTTTCCGCGCGGAGGACATTGTTCTCCGCCAGCGTCCAATTT
CTTTCTCTCCTGAGCCGGAA

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MRKKSIVSEANEIKTAIELIRLGARLQLLESETTLSRERLIKLYKELKGVSPPKGMLPFSTDWFLTWQPNIHSSVFADIY
RYLIAHGDCRGISAIIKSYKLYLEHCQVCEMEPILSLTRAWTLVRFFESKLMQTTACNQCGGHFVVHANDLHHRYVCGLC
HMPSRAGKTNKARTAMVAEAA

Sequences:

>Translated_181_residues
MRKKSIVSEANEIKTAIELIRLGARLQLLESETTLSRERLIKLYKELKGVSPPKGMLPFSTDWFLTWQPNIHSSVFADIY
RYLIAHGDCRGISAIIKSYKLYLEHCQVCEMEPILSLTRAWTLVRFFESKLMQTTACNQCGGHFVVHANDLHHRYVCGLC
HMPSRAGKTNKARTAMVAEAA
>Mature_181_residues
MRKKSIVSEANEIKTAIELIRLGARLQLLESETTLSRERLIKLYKELKGVSPPKGMLPFSTDWFLTWQPNIHSSVFADIY
RYLIAHGDCRGISAIIKSYKLYLEHCQVCEMEPILSLTRAWTLVRFFESKLMQTTACNQCGGHFVVHANDLHHRYVCGLC
HMPSRAGKTNKARTAMVAEAA

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=171, Percent_Identity=59.6491228070175, Blast_Score=224, Evalue=3e-60,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 20598; Mature: 20598

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKSIVSEANEIKTAIELIRLGARLQLLESETTLSRERLIKLYKELKGVSPPKGMLPFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFLTWQPNIHSSVFADIYRYLIAHGDCRGISAIIKSYKLYLEHCQVCEMEPILSLTRA
CCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
WTLVRFFESKLMQTTACNQCGGHFVVHANDLHHRYVCGLCHMPSRAGKTNKARTAMVAEA
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCC
A
C
>Mature Secondary Structure
MRKKSIVSEANEIKTAIELIRLGARLQLLESETTLSRERLIKLYKELKGVSPPKGMLPFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFLTWQPNIHSSVFADIYRYLIAHGDCRGISAIIKSYKLYLEHCQVCEMEPILSLTRA
CCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
WTLVRFFESKLMQTTACNQCGGHFVVHANDLHHRYVCGLCHMPSRAGKTNKARTAMVAEA
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9287017 [H]