| Definition | Nitrosospira multiformis ATCC 25196 chromosome, complete genome. |
|---|---|
| Accession | NC_007614 |
| Length | 3,184,243 |
Click here to switch to the map view.
The map label for this gene is yghA [H]
Identifier: 82702421
GI number: 82702421
Start: 1485371
End: 1486390
Strand: Direct
Name: yghA [H]
Synonym: Nmul_A1292
Alternate gene names: 82702421
Gene position: 1485371-1486390 (Clockwise)
Preceding gene: 82702419
Following gene: 82702423
Centisome position: 46.65
GC content: 58.43
Gene sequence:
>1020_bases ATGAAACCAGAAGACAACGCCAATGCCGCACGGCGCCAGTTTGTGGGCGGCATGACAACCGGCCTTGCCGCAGCATTTGT CTACCCGGCCTTCGCTCAGCAAGGGCAGCAAGCAAACCCTTCCGGCTCCCTGCAAGGGCCCGGCCAGTCCCGTAAGCAGG ATCCGAGAACGCAATATCCTATTCCCCCCTTTCCCCAGCAAAAACAGGAGCCTCCCGGCCTTGTAAGCAAGATGATGCCG CGGCCTGATCACGGCGAGACAACCTACAAGGGTTCGGGGCGGCTAGTGGATAGAAAGGCGCTTGTGACCGGTGGAGATTC GGGCATTGGACGCGCCGCCGCCATCGCCTTTGCGCGTGAGGGAGCCGATGTCGCGATTAATTATCTCCCGGTCGAGGAGT CCGATGCTCGTGAGGTCGTGGAAATCATCCGGGCAGAAGGGCGAAAGGCGGTCGCGATTCCTGGCGATATCAGGGATGAG AATTTTTGCTCCAGGCTTGTCGCCAACGCCGTCCGGGAGCTGGGCGGACTGGATATCCTTGTCAACAATGCGGCCATGGC TGTCGCACAGCCCTCTATCGTTGATCTCACGACAGAACAGTTCGATTCGATCTTCAAATGCAACGTCTATGCCATGTTCT GGATCACCAAGGCGGCCATGCCGCACCTTAAGCCCGGAGCGGCCATCATCAATACAAGTTCTGTTGAGGCTTACACTCCA TCCGATGCGTTTCTCGACTACGCCCAGACAAAGGCGTGCAATGTTGCTTTCACGAAATCACTGGCGAAGCAGTTGGCCAA CAAGGGTATCCGGGTGAATGCGGTGGCGCCGGGACCATTCTGGACACCGTTGCAGACGGCTGGATGGGCGGATCTCAGCA GGTTGGGCAAGGAGACTCCGCTTGGCAGACCCGGTCAACCAGCGGAACTGGGTCCCCTGTATGTTTTCCTTGCATCACAG GAATCAAGCTATGCAACCGGACAGGTGTACGGCGCTTCAGGGGGGGAAGGGCAGCCCTAA
Upstream 100 bases:
>100_bases TCGTTCGACATCGGTTTGCAACGAAACTGTTTCGGGTTACTCCCGGAACTGGCGAAAACTGACCGGAAACTGTCCCAGCA ATTTTCTCAGGAGAACAGAT
Downstream 100 bases:
>100_bases TGATGTCTAAAACCTCAAGGTTTCTTATGACCACATAGGTGATAATGCGTATGGTAGGGTAAATACCAGGCTTTCACCGC TTTCTGCAGCTTTTCCTTGT
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MKPEDNANAARRQFVGGMTTGLAAAFVYPAFAQQGQQANPSGSLQGPGQSRKQDPRTQYPIPPFPQQKQEPPGLVSKMMP RPDHGETTYKGSGRLVDRKALVTGGDSGIGRAAAIAFAREGADVAINYLPVEESDAREVVEIIRAEGRKAVAIPGDIRDE NFCSRLVANAVRELGGLDILVNNAAMAVAQPSIVDLTTEQFDSIFKCNVYAMFWITKAAMPHLKPGAAIINTSSVEAYTP SDAFLDYAQTKACNVAFTKSLAKQLANKGIRVNAVAPGPFWTPLQTAGWADLSRLGKETPLGRPGQPAELGPLYVFLASQ ESSYATGQVYGASGGEGQP
Sequences:
>Translated_339_residues MKPEDNANAARRQFVGGMTTGLAAAFVYPAFAQQGQQANPSGSLQGPGQSRKQDPRTQYPIPPFPQQKQEPPGLVSKMMP RPDHGETTYKGSGRLVDRKALVTGGDSGIGRAAAIAFAREGADVAINYLPVEESDAREVVEIIRAEGRKAVAIPGDIRDE NFCSRLVANAVRELGGLDILVNNAAMAVAQPSIVDLTTEQFDSIFKCNVYAMFWITKAAMPHLKPGAAIINTSSVEAYTP SDAFLDYAQTKACNVAFTKSLAKQLANKGIRVNAVAPGPFWTPLQTAGWADLSRLGKETPLGRPGQPAELGPLYVFLASQ ESSYATGQVYGASGGEGQP >Mature_339_residues MKPEDNANAARRQFVGGMTTGLAAAFVYPAFAQQGQQANPSGSLQGPGQSRKQDPRTQYPIPPFPQQKQEPPGLVSKMMP RPDHGETTYKGSGRLVDRKALVTGGDSGIGRAAAIAFAREGADVAINYLPVEESDAREVVEIIRAEGRKAVAIPGDIRDE NFCSRLVANAVRELGGLDILVNNAAMAVAQPSIVDLTTEQFDSIFKCNVYAMFWITKAAMPHLKPGAAIINTSSVEAYTP SDAFLDYAQTKACNVAFTKSLAKQLANKGIRVNAVAPGPFWTPLQTAGWADLSRLGKETPLGRPGQPAELGPLYVFLASQ ESSYATGQVYGASGGEGQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=33.739837398374, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI59889578, Length=232, Percent_Identity=33.6206896551724, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=28.8537549407115, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=31.3008130081301, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=31.9672131147541, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=27.710843373494, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=29.8039215686275, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=32.9842931937173, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=31.0483870967742, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=28.2442748091603, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI4504505, Length=251, Percent_Identity=29.8804780876494, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=32.0158102766798, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI40254986, Length=149, Percent_Identity=34.2281879194631, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4758504, Length=251, Percent_Identity=29.8804780876494, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI4503301, Length=204, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=37.037037037037, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI31542939, Length=213, Percent_Identity=29.1079812206573, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789378, Length=290, Percent_Identity=59.6551724137931, Blast_Score=343, Evalue=9e-96, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=34.6938775510204, Blast_Score=128, Evalue=7e-31, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=34.2307692307692, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=31.7073170731707, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=29.2682926829268, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=32.1138211382114, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=32.0987654320988, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=34.156378600823, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87082160, Length=243, Percent_Identity=30.0411522633745, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=28.8617886178862, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=29.1338582677165, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787526, Length=247, Percent_Identity=28.7449392712551, Blast_Score=66, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=30.9803921568627, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=32.9268292682927, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=32.2709163346614, Blast_Score=114, Evalue=9e-26, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=33.8461538461538, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=33.7349397590361, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=34.4827586206897, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=34.2205323193916, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=30.5019305019305, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=33.5849056603774, Blast_Score=105, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=33.4600760456274, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=33.2046332046332, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=29.5019157088123, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=31.5384615384615, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=30.7116104868914, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=31.5589353612167, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17563726, Length=258, Percent_Identity=29.0697674418605, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=30.6513409961686, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17538480, Length=274, Percent_Identity=30.2919708029197, Blast_Score=95, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=31.3432835820896, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=31.0756972111554, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=31.4176245210728, Blast_Score=91, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=31.2977099236641, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=26.7924528301887, Blast_Score=85, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=30.078125, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17568967, Length=256, Percent_Identity=28.515625, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=27.2357723577236, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71982365, Length=140, Percent_Identity=31.4285714285714, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17538182, Length=246, Percent_Identity=31.7073170731707, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=28.3422459893048, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=28.2828282828283, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17561272, Length=243, Percent_Identity=29.2181069958848, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=208, Percent_Identity=29.8076923076923, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=30.1020408163265, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=32.8, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=34.5528455284553, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=33.6, Blast_Score=117, Evalue=8e-27, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=33.4677419354839, Blast_Score=111, Evalue=8e-25, Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=31.3725490196078, Blast_Score=101, Evalue=9e-22, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=30.8, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24643142, Length=162, Percent_Identity=35.8024691358025, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI17737361, Length=229, Percent_Identity=31.4410480349345, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24644337, Length=175, Percent_Identity=36.5714285714286, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=29.0816326530612, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 36040; Mature: 36040
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPEDNANAARRQFVGGMTTGLAAAFVYPAFAQQGQQANPSGSLQGPGQSRKQDPRTQYP CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC IPPFPQQKQEPPGLVSKMMPRPDHGETTYKGSGRLVDRKALVTGGDSGIGRAAAIAFARE CCCCCCCCCCCCCHHHHHCCCCCCCCCEECCCCCEEECEEEEECCCCCCCHHHHHHHHHC GADVAINYLPVEESDAREVVEIIRAEGRKAVAIPGDIRDENFCSRLVANAVRELGGLDIL CCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEE VNNAAMAVAQPSIVDLTTEQFDSIFKCNVYAMFWITKAAMPHLKPGAAIINTSSVEAYTP ECCCCCEEECCCCEECCHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCEEEECCCCCEECC SDAFLDYAQTKACNVAFTKSLAKQLANKGIRVNAVAPGPFWTPLQTAGWADLSRLGKETP CHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCC LGRPGQPAELGPLYVFLASQESSYATGQVYGASGGEGQP CCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCC >Mature Secondary Structure MKPEDNANAARRQFVGGMTTGLAAAFVYPAFAQQGQQANPSGSLQGPGQSRKQDPRTQYP CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC IPPFPQQKQEPPGLVSKMMPRPDHGETTYKGSGRLVDRKALVTGGDSGIGRAAAIAFARE CCCCCCCCCCCCCHHHHHCCCCCCCCCEECCCCCEEECEEEEECCCCCCCHHHHHHHHHC GADVAINYLPVEESDAREVVEIIRAEGRKAVAIPGDIRDENFCSRLVANAVRELGGLDIL CCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEE VNNAAMAVAQPSIVDLTTEQFDSIFKCNVYAMFWITKAAMPHLKPGAAIINTSSVEAYTP ECCCCCEEECCCCEECCHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCEEEECCCCCEECC SDAFLDYAQTKACNVAFTKSLAKQLANKGIRVNAVAPGPFWTPLQTAGWADLSRLGKETP CHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCC LGRPGQPAELGPLYVFLASQESSYATGQVYGASGGEGQP CCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]