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The map label for this gene is cspA [H]

Identifier: 82702420

GI number: 82702420

Start: 1484606

End: 1484809

Strand: Reverse

Name: cspA [H]

Synonym: Nmul_A1291

Alternate gene names: 82702420

Gene position: 1484809-1484606 (Counterclockwise)

Preceding gene: 82702422

Following gene: 82702418

Centisome position: 46.63

GC content: 47.06

Gene sequence:

>204_bases
ATGGCAACTGGCACAGTAAAATGGTTCAATGAGGCAAAAGGATTCGGTTTTATTACCCCTGTTGACGGCAGTGAAGATTT
ATTCGCGCACTTCTCCGCAATCAACATGTCCGGCTTCAAGACCCTCAAGGAGGGACAAAAAGTAACGTTTGAGATTACGC
AGGGCCCAAAGGGCAAGCAGGCATCAAACATTCAAGCTGCGTAA

Upstream 100 bases:

>100_bases
CTTCGGTACGGTAGCGAACATATTTCTCATTCAGGGATCGTCAGAATGCGGTCAGACCCGAAAAATGGGTCTCTTTTTAA
CTGATATATAGGAAGCAAAA

Downstream 100 bases:

>100_bases
GATTGCACGCTGGGCGGGATATTCGTGCCAGCGTGCAGCTCTGTCATAGAGTTACCCGATCCATATGCTATTTCTATTTG
GCTGGTTGGCGGTCAGCCAG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MATGTVKWFNEAKGFGFITPVDGSEDLFAHFSAINMSGFKTLKEGQKVTFEITQGPKGKQASNIQAA

Sequences:

>Translated_67_residues
MATGTVKWFNEAKGFGFITPVDGSEDLFAHFSAINMSGFKTLKEGQKVTFEITQGPKGKQASNIQAA
>Mature_66_residues
ATGTVKWFNEAKGFGFITPVDGSEDLFAHFSAINMSGFKTLKEGQKVTFEITQGPKGKQASNIQAA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=69.8412698412698, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=64.0625, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI1788126, Length=63, Percent_Identity=68.2539682539683, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=64.5161290322581, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=62.5, Blast_Score=86, Evalue=7e-19,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=61.2903225806452, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=62.5, Blast_Score=82, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=46.031746031746, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7212; Mature: 7081

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNEAKGFGFITPVDGSEDLFAHFSAINMSGFKTLKEGQKVTFEITQGPKGKQ
CCCCCCEECCCCCCCEEEEECCCCCCCEEEHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
ASNIQAA
CCCCCCC
>Mature Secondary Structure 
ATGTVKWFNEAKGFGFITPVDGSEDLFAHFSAINMSGFKTLKEGQKVTFEITQGPKGKQ
CCCCCEECCCCCCCEEEEECCCCCCCEEEHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
ASNIQAA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA