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The map label for this gene is yncD [C]

Identifier: 82702362

GI number: 82702362

Start: 1416608

End: 1418725

Strand: Direct

Name: yncD [C]

Synonym: Nmul_A1233

Alternate gene names: 82702362

Gene position: 1416608-1418725 (Clockwise)

Preceding gene: 82702358

Following gene: 82702363

Centisome position: 44.49

GC content: 51.46

Gene sequence:

>2118_bases
GTGGGATATGAATATCGATCAGAGCGCGCTATCAGAGACAATTGCCGCACTTATTCGGCTCGATCGGTTTGCCATGTTGT
TCTTTCGATTGAAGCGGTACTTGCGGGAATGATGGTGCCGTGGTGCAGCAACGCAGCAGGGATCCTGACCCTGAATGAAG
TGGAAGTCCGGGCTGATGCCAGAAATCTCATCGGGACTGCCGATTCGGCAAACGAGGGCACTGTACTCAAGCGCCAGCTT
GATGAGCGGACGGTTTATCGACCGGGGGAATTGCTCGAAACCGTTCCCGGCCTTATCGTCACCCAGCATAGTGGGGAAGG
CAAGGCTAATCAGTACTTTGCGCGTGGTTTCAATCTCGATCATGGAACCGATCTGAGGATAACCGTGGATGGCATGCTGG
TAAACCAACGTTCCCACGGTCACGGACAGGGCTGGGCCGACATGAATTTCATCATTCCCGAACTGGCCGGTGGATTGCGA
TATCAAAAGGGCCCTTATTATGCTGATCTGGGCGATTTCTCCTCGGCAGGTGCGGTCAGTATGAGTTATGTCGATAAGCT
GCCGCGTGGCATTGCCAACTACGGAGTAGGCCAGCAGGGCTTCATACGTGGATTATTGGCAAAATCTTATGAGGCGGGCA
ACGGCAATTTTTTATATGCTTTTGAACTGCTGACCAAGGATGGCCCCTGGATTAACAAAGAGAATTACAAGAAATTCAAC
GCTGTATTGCGCTACAGTCAAAATACGGGCAACACCCGATTCAATATCACCGCAATGGGTTATGGTGGAAACTGGAATGC
GACCGATCAGATACCACAACGCGCAGTAACGTGGGGTCTGATTCCTCGCCTGGGCGCAATTGACCCGAGCGACGGGGGAG
AATCCCATCGCTTCAGTTTATCGGCGGCCTTGCAACACACGAGCAATCATGGAGTGACGAGAGCAAATCTCTATACTATC
CATAGCAATCTCGCATTGTTTTCCAATTTTACCTATTTCCTCGACGATCCCATCAATGGTGATCAGTTTTCCCAAACCGA
CAAACGCTTCCAGTCTGCCTTCAACCTGAATCATACGTGGGTAACCGGTTTGGCAGGGTTCGCATTCGAAAATCTGGCGG
GCATCCAGGTCCAGAGCGATGTTATAGATAATGGCCTGCTAAGCACGCAGCAGCGCCGGGTATTGTCGGTTACGCGTAAA
GACCATGTGCTCGAAAACAGTGTGGGTCTCTATTACCAAAACAGCGTTCAATGGCTGGAAAAATTTCGCAGCGTGGCGGG
AGTGCGTAGCGACTTTTACTGGTTTGATATCAATAGCAATATTGACGCCAATTCCGGCAGGGAATACGACAGCATCACGA
ATCCCAAGCTCAGCCTGATTTTTGGCCCATGGGCGAAGACGGAGTATTACTTCAACTACGGCAGCGGGTTCCATAGCAAC
GATGCGCGAGGTGTGACGACAACCGTGGATCCTAAATCCCGAGAACCTGTAAGCAGAGTCCATCCACTCGTCCGCTCTAC
GGGGTATGAGGCGGGACTACGCACAGCCATCATCCCCGGACTGCAGGCGTCGATCACATTTTTTCAACTGGATCTGGCCT
CCGAGCTGTTATTCGTGGGGGATGCCGGCACGACCGAGGCAAGCCGTCCCAGTCGACGCAAGGGGTTCGAGCTTTCGGCA
TTCTATATGCCCAATAACTGGCTAATGATGGATTTGGATTATGCGTTGGCCGATGCCAGGTTTACCGATTGGGATCCGGC
AGGCAATCACATTCCCGGCGCAGTCAAAGGGGTGGGGAAATTTGCTGTTGCCGTGGACAATCTGGGTCCTCTCTTTGGCA
GCATGCAGATCCGTTATTTTGGAAAACGACCGCAGGTGGAGGATAACAGCATTCAGTCGGGCAATACCGTCACAGTCAAT
GGGCAGATCGGGATAAAGATCGATAAGAAATTCCGCGTAATGCTACAGGTATTCAATCTATTCAATACCAAGGCTCACGC
GATTGATTACTACTATACCTCCCGACTTCCCAATGAGCCCGATGCCGGTATTGCCGACAGGCACTTTCATCCTATCGAAA
GCCGTTCTTTCCGGATCAATCTGGTCGGGAATTTTTAA

Upstream 100 bases:

>100_bases
TTTCGTCTGGAGGTATTACGAATCTGCAATATTTCCTACCATTTTATTTATTGTGGTTCAAGTTTCACTATAAGGAAATC
AAGCAAGGAACCTGTTTCGA

Downstream 100 bases:

>100_bases
AGATCAGCATACTGCTGAATAACCTATCGAACTATTGAATATCTGGAGCCAGGCAATGGAACGTCTTACCATCTCACTGA
ATGATCAGCTTGCCAAGCAG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Receptor; Outer Membrane Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Outer Membrane Receptor; Outer Membrane Receptor; Outer Membrane Receptor Signal Peptide Protein; Iron Transport Outer Membrane Receptor; Outer Membrane Recepter Signal Peptide Protein; Outer Membrane Receptor For Iron Transport; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Cobalamin Transporter; NB-Dependent Receptor Plug Domain Protein

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MGYEYRSERAIRDNCRTYSARSVCHVVLSIEAVLAGMMVPWCSNAAGILTLNEVEVRADARNLIGTADSANEGTVLKRQL
DERTVYRPGELLETVPGLIVTQHSGEGKANQYFARGFNLDHGTDLRITVDGMLVNQRSHGHGQGWADMNFIIPELAGGLR
YQKGPYYADLGDFSSAGAVSMSYVDKLPRGIANYGVGQQGFIRGLLAKSYEAGNGNFLYAFELLTKDGPWINKENYKKFN
AVLRYSQNTGNTRFNITAMGYGGNWNATDQIPQRAVTWGLIPRLGAIDPSDGGESHRFSLSAALQHTSNHGVTRANLYTI
HSNLALFSNFTYFLDDPINGDQFSQTDKRFQSAFNLNHTWVTGLAGFAFENLAGIQVQSDVIDNGLLSTQQRRVLSVTRK
DHVLENSVGLYYQNSVQWLEKFRSVAGVRSDFYWFDINSNIDANSGREYDSITNPKLSLIFGPWAKTEYYFNYGSGFHSN
DARGVTTTVDPKSREPVSRVHPLVRSTGYEAGLRTAIIPGLQASITFFQLDLASELLFVGDAGTTEASRPSRRKGFELSA
FYMPNNWLMMDLDYALADARFTDWDPAGNHIPGAVKGVGKFAVAVDNLGPLFGSMQIRYFGKRPQVEDNSIQSGNTVTVN
GQIGIKIDKKFRVMLQVFNLFNTKAHAIDYYYTSRLPNEPDAGIADRHFHPIESRSFRINLVGNF

Sequences:

>Translated_705_residues
MGYEYRSERAIRDNCRTYSARSVCHVVLSIEAVLAGMMVPWCSNAAGILTLNEVEVRADARNLIGTADSANEGTVLKRQL
DERTVYRPGELLETVPGLIVTQHSGEGKANQYFARGFNLDHGTDLRITVDGMLVNQRSHGHGQGWADMNFIIPELAGGLR
YQKGPYYADLGDFSSAGAVSMSYVDKLPRGIANYGVGQQGFIRGLLAKSYEAGNGNFLYAFELLTKDGPWINKENYKKFN
AVLRYSQNTGNTRFNITAMGYGGNWNATDQIPQRAVTWGLIPRLGAIDPSDGGESHRFSLSAALQHTSNHGVTRANLYTI
HSNLALFSNFTYFLDDPINGDQFSQTDKRFQSAFNLNHTWVTGLAGFAFENLAGIQVQSDVIDNGLLSTQQRRVLSVTRK
DHVLENSVGLYYQNSVQWLEKFRSVAGVRSDFYWFDINSNIDANSGREYDSITNPKLSLIFGPWAKTEYYFNYGSGFHSN
DARGVTTTVDPKSREPVSRVHPLVRSTGYEAGLRTAIIPGLQASITFFQLDLASELLFVGDAGTTEASRPSRRKGFELSA
FYMPNNWLMMDLDYALADARFTDWDPAGNHIPGAVKGVGKFAVAVDNLGPLFGSMQIRYFGKRPQVEDNSIQSGNTVTVN
GQIGIKIDKKFRVMLQVFNLFNTKAHAIDYYYTSRLPNEPDAGIADRHFHPIESRSFRINLVGNF
>Mature_704_residues
GYEYRSERAIRDNCRTYSARSVCHVVLSIEAVLAGMMVPWCSNAAGILTLNEVEVRADARNLIGTADSANEGTVLKRQLD
ERTVYRPGELLETVPGLIVTQHSGEGKANQYFARGFNLDHGTDLRITVDGMLVNQRSHGHGQGWADMNFIIPELAGGLRY
QKGPYYADLGDFSSAGAVSMSYVDKLPRGIANYGVGQQGFIRGLLAKSYEAGNGNFLYAFELLTKDGPWINKENYKKFNA
VLRYSQNTGNTRFNITAMGYGGNWNATDQIPQRAVTWGLIPRLGAIDPSDGGESHRFSLSAALQHTSNHGVTRANLYTIH
SNLALFSNFTYFLDDPINGDQFSQTDKRFQSAFNLNHTWVTGLAGFAFENLAGIQVQSDVIDNGLLSTQQRRVLSVTRKD
HVLENSVGLYYQNSVQWLEKFRSVAGVRSDFYWFDINSNIDANSGREYDSITNPKLSLIFGPWAKTEYYFNYGSGFHSND
ARGVTTTVDPKSREPVSRVHPLVRSTGYEAGLRTAIIPGLQASITFFQLDLASELLFVGDAGTTEASRPSRRKGFELSAF
YMPNNWLMMDLDYALADARFTDWDPAGNHIPGAVKGVGKFAVAVDNLGPLFGSMQIRYFGKRPQVEDNSIQSGNTVTVNG
QIGIKIDKKFRVMLQVFNLFNTKAHAIDYYYTSRLPNEPDAGIADRHFHPIESRSFRINLVGNF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78406; Mature: 78275

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYEYRSERAIRDNCRTYSARSVCHVVLSIEAVLAGMMVPWCSNAAGILTLNEVEVRADA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECH
RNLIGTADSANEGTVLKRQLDERTVYRPGELLETVPGLIVTQHSGEGKANQYFARGFNLD
HHHEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCCCCCCHHEEECCCCC
HGTDLRITVDGMLVNQRSHGHGQGWADMNFIIPELAGGLRYQKGPYYADLGDFSSAGAVS
CCCEEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHCCCCEECCCCCEECCCCCCCCCCCH
MSYVDKLPRGIANYGVGQQGFIRGLLAKSYEAGNGNFLYAFELLTKDGPWINKENYKKFN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCEECCCCCEEEEEEEEECCCCCCCCCHHHHEE
AVLRYSQNTGNTRFNITAMGYGGNWNATDQIPQRAVTWGLIPRLGAIDPSDGGESHRFSL
HHEEECCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEH
SAALQHTSNHGVTRANLYTIHSNLALFSNFTYFLDDPINGDQFSQTDKRFQSAFNLNHTW
HHHHHHCCCCCCEEEEEEEEECCEEEECCCEEEECCCCCCCCCHHHHHHHHHHHCCCCHH
VTGLAGFAFENLAGIQVQSDVIDNGLLSTQQRRVLSVTRKDHVLENSVGLYYQNSVQWLE
HHHHHHHHHHCCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHH
KFRSVAGVRSDFYWFDINSNIDANSGREYDSITNPKLSLIFGPWAKTEYYFNYGSGFHSN
HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCC
DARGVTTTVDPKSREPVSRVHPLVRSTGYEAGLRTAIIPGLQASITFFQLDLASELLFVG
CCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEE
DAGTTEASRPSRRKGFELSAFYMPNNWLMMDLDYALADARFTDWDPAGNHIPGAVKGVGK
CCCCCCCCCCCHHCCCEEEEEEECCCEEEEEECHHHHCCCCCCCCCCCCCCCHHHHCCCE
FAVAVDNLGPLFGSMQIRYFGKRPQVEDNSIQSGNTVTVNGQIGIKIDKKFRVMLQVFNL
EEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECEEEEEECHHHHHHHHHHHH
FNTKAHAIDYYYTSRLPNEPDAGIADRHFHPIESRSFRINLVGNF
HCCCHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
GYEYRSERAIRDNCRTYSARSVCHVVLSIEAVLAGMMVPWCSNAAGILTLNEVEVRADA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECH
RNLIGTADSANEGTVLKRQLDERTVYRPGELLETVPGLIVTQHSGEGKANQYFARGFNLD
HHHEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCCCCCCHHEEECCCCC
HGTDLRITVDGMLVNQRSHGHGQGWADMNFIIPELAGGLRYQKGPYYADLGDFSSAGAVS
CCCEEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHCCCCEECCCCCEECCCCCCCCCCCH
MSYVDKLPRGIANYGVGQQGFIRGLLAKSYEAGNGNFLYAFELLTKDGPWINKENYKKFN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCEECCCCCEEEEEEEEECCCCCCCCCHHHHEE
AVLRYSQNTGNTRFNITAMGYGGNWNATDQIPQRAVTWGLIPRLGAIDPSDGGESHRFSL
HHEEECCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEH
SAALQHTSNHGVTRANLYTIHSNLALFSNFTYFLDDPINGDQFSQTDKRFQSAFNLNHTW
HHHHHHCCCCCCEEEEEEEEECCEEEECCCEEEECCCCCCCCCHHHHHHHHHHHCCCCHH
VTGLAGFAFENLAGIQVQSDVIDNGLLSTQQRRVLSVTRKDHVLENSVGLYYQNSVQWLE
HHHHHHHHHHCCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHH
KFRSVAGVRSDFYWFDINSNIDANSGREYDSITNPKLSLIFGPWAKTEYYFNYGSGFHSN
HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCC
DARGVTTTVDPKSREPVSRVHPLVRSTGYEAGLRTAIIPGLQASITFFQLDLASELLFVG
CCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEE
DAGTTEASRPSRRKGFELSAFYMPNNWLMMDLDYALADARFTDWDPAGNHIPGAVKGVGK
CCCCCCCCCCCHHCCCEEEEEEECCCEEEEEECHHHHCCCCCCCCCCCCCCCHHHHCCCE
FAVAVDNLGPLFGSMQIRYFGKRPQVEDNSIQSGNTVTVNGQIGIKIDKKFRVMLQVFNL
EEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECEEEEEECHHHHHHHHHHHH
FNTKAHAIDYYYTSRLPNEPDAGIADRHFHPIESRSFRINLVGNF
HCCCHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA