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The map label for this gene is ccmF [H]

Identifier: 82702338

GI number: 82702338

Start: 1394268

End: 1396307

Strand: Reverse

Name: ccmF [H]

Synonym: Nmul_A1209

Alternate gene names: 82702338

Gene position: 1396307-1394268 (Counterclockwise)

Preceding gene: 82702339

Following gene: 82702337

Centisome position: 43.85

GC content: 57.01

Gene sequence:

>2040_bases
ATGATTCCAGAACTTGGTAACTTTGCCCTGATCCTCGCCTTGCTGCTGGCACTCATACAAGGCACCCTGCCCATCATCGG
CGCCGCCCGCGGCATCCCTTCCTGGATCGCCCTGGCGCGGCCGGTGGTTCAGGGGCAGTTTGTGTTTGTAGCCATCGCCT
TCTTCTGCCTGGCCTATTCATTCGTAAACAGTGATTTTTCCGTGGTCAACGTCGCGCAGAACTCGAATTCGAACCTGCCG
CTGCAGTACCGCTTTGCCGCCACATGGGGCTCGCATGAGGGCTCCCTGCTGCTCTGGACGTTCATGCTGGCATGCTGGTC
GGTGGCGGTAAGCGTATTCAGCAAGCATTTGCCGAATGAAATGGTGGCGCGCGTGCTGGGCGTCATGGGCCTCGTCAGCG
TGGGTTTTCTGATATTCATGCTTTTCACTTCCAATCCTTTCGAGCGGATGCTGCCCGGGGCGATGGAAGGAAGCGACCTC
AACCCGCTGCTGCAGGACCCCGGCATGGTCTGCCATCCGCCCATGCTTTACATGGGTTATGTCGGCTTTTCCGTGGCGTT
TGCATTCGCCATTTCCGCACTGCTGAGCGGCCAGATGGATGCGACCTGGGCGCGCTGGTCGCGGCCGTGGACCACGGTGG
CCTGGATGTTCCTCACCATCGGCATCATGATGGGAAGCTGGTGGGCCTATTATGAACTGGGCTGGGGCGGATGGTGGTTC
TGGGATCCGGTTGAAAATGCCTCTTTCATGCCCTGGCTGGTGGGAACTGCCCTGGTTCATTCCCTTGCCGTGACGGAAAA
ACGCGGCAGCTTCAAGAGCTGGACCGTGCTGCTGGCAATCTGCGCATTTTCCCTGAGCCTGCTCGGTACGTTCCTGGTTC
GCTCGGGCGTGCTGACCTCGGTTCACGCTTTTGCAACCGATCCCACGCGCGGTATATTCATCCTGGCCTTTCTGGTGACC
ATCACTGGAGGCTCTCTGCTGCTTTTTGCATGGCGGGCGCCAAAAATCGGGTTGGGTGGAAAGTTCGAACTGGTTTCACG
CGAATCCATGCTGCTCGCCAACAATCTGTTGATGATGGTTGCAGCGGGAAGCATACTGCTGGGCACACTCTATCCCCTGT
TCATGGATGCGCTTGAACTCGGCAAGATTTCGGTTGGCCCTCCCTACTTCGAAGCAGTATTCGTCCCGTTGATGACTCCC
GCCGTCTTTCTGATCGGCCTTGGCCCCCTTGCGCGCTGGAAGCAGGCAAGCCTGCCTGAGCTTGCGGTACGCCTGCGTTG
GGCATTCGGGGTAAGCGCAGTTACCGCTCTCGTCATGCCCTTTATCATGGGTGAATGGAAGCTGATGGTGAGCTTCAGTC
TGCTGATGGCTTTCTGGGTCATTACGAGCGTGATCGTCAGCGTAATTCATCGTCTCCGCAGCACCGGCAAGCAGGGCTTG
CTTGCGAAGCTGGCCGCGCAATCGCGCAGCTACTACGGCATGCACGCTGCCCACCTTGGGATTGCCTTCTTTATTATCGG
TGTGGCGCTTGTGGGTGGTTATGAAACGGAAAAAGATGTGCGCATGGAAATTGGCGACACGGTCGAGGTAGGAGGCTATA
CCTTCCGCTTCAATGGCGTGAAAAAAGCGCCGGGTCCAAACTACATGTCCGACATCGGCAATGTCGACGTATTGCGCGAC
GGAAAGAAAATCAATGTACTGGAACCGGAAAAACGAACCTATAACGCATCCGGGATGCCGATGACCGAAGCGGCAATCGA
TGCCGGTATTCTCCGCGATCTGTATGTTGCTCTGGGTGAACCCCTGGAAAACGGAGCATGGGTCGTGCGTGTTTACCATA
AGCCCTTCGTCGACTGGATATGGTTCGGCTGTATGTTGATGGCATTCGGAGGCTTCCTTGCCATCACTGACAGACGTTAT
CGCCTGTCCTCACGCAAACAGCGCGAGACCGTAGAGATAGAGGAAAGGAAGGTCGCTAAAGCCAGCAAAGCCGGCAGGAA
AGCCACTGCGCCCATGATTGCCCGGAGCAAAAAGGCATGA

Upstream 100 bases:

>100_bases
CAGTAGCAAAAAGTTTCGCCCCGAGCCCTTCCCGAACCGAAAGGGCTCTGTCATTCCTGCTCATATCTATTCATATTTTC
CATAACCCACAGCCTCAGCC

Downstream 100 bases:

>100_bases
CGCGCTTCCTGCTGCCGCTCGCTGTTTTTGTCGTACTGGTAGGTTTTCTGCTCGTCGGCCTGGGTCTCAATCCGCGCCAA
GTCCCCTCTCCCCTGGTGGG

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 679

Protein sequence:

>679_residues
MIPELGNFALILALLLALIQGTLPIIGAARGIPSWIALARPVVQGQFVFVAIAFFCLAYSFVNSDFSVVNVAQNSNSNLP
LQYRFAATWGSHEGSLLLWTFMLACWSVAVSVFSKHLPNEMVARVLGVMGLVSVGFLIFMLFTSNPFERMLPGAMEGSDL
NPLLQDPGMVCHPPMLYMGYVGFSVAFAFAISALLSGQMDATWARWSRPWTTVAWMFLTIGIMMGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLAVTEKRGSFKSWTVLLAICAFSLSLLGTFLVRSGVLTSVHAFATDPTRGIFILAFLVT
ITGGSLLLFAWRAPKIGLGGKFELVSRESMLLANNLLMMVAAGSILLGTLYPLFMDALELGKISVGPPYFEAVFVPLMTP
AVFLIGLGPLARWKQASLPELAVRLRWAFGVSAVTALVMPFIMGEWKLMVSFSLLMAFWVITSVIVSVIHRLRSTGKQGL
LAKLAAQSRSYYGMHAAHLGIAFFIIGVALVGGYETEKDVRMEIGDTVEVGGYTFRFNGVKKAPGPNYMSDIGNVDVLRD
GKKINVLEPEKRTYNASGMPMTEAAIDAGILRDLYVALGEPLENGAWVVRVYHKPFVDWIWFGCMLMAFGGFLAITDRRY
RLSSRKQRETVEIEERKVAKASKAGRKATAPMIARSKKA

Sequences:

>Translated_679_residues
MIPELGNFALILALLLALIQGTLPIIGAARGIPSWIALARPVVQGQFVFVAIAFFCLAYSFVNSDFSVVNVAQNSNSNLP
LQYRFAATWGSHEGSLLLWTFMLACWSVAVSVFSKHLPNEMVARVLGVMGLVSVGFLIFMLFTSNPFERMLPGAMEGSDL
NPLLQDPGMVCHPPMLYMGYVGFSVAFAFAISALLSGQMDATWARWSRPWTTVAWMFLTIGIMMGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLAVTEKRGSFKSWTVLLAICAFSLSLLGTFLVRSGVLTSVHAFATDPTRGIFILAFLVT
ITGGSLLLFAWRAPKIGLGGKFELVSRESMLLANNLLMMVAAGSILLGTLYPLFMDALELGKISVGPPYFEAVFVPLMTP
AVFLIGLGPLARWKQASLPELAVRLRWAFGVSAVTALVMPFIMGEWKLMVSFSLLMAFWVITSVIVSVIHRLRSTGKQGL
LAKLAAQSRSYYGMHAAHLGIAFFIIGVALVGGYETEKDVRMEIGDTVEVGGYTFRFNGVKKAPGPNYMSDIGNVDVLRD
GKKINVLEPEKRTYNASGMPMTEAAIDAGILRDLYVALGEPLENGAWVVRVYHKPFVDWIWFGCMLMAFGGFLAITDRRY
RLSSRKQRETVEIEERKVAKASKAGRKATAPMIARSKKA
>Mature_679_residues
MIPELGNFALILALLLALIQGTLPIIGAARGIPSWIALARPVVQGQFVFVAIAFFCLAYSFVNSDFSVVNVAQNSNSNLP
LQYRFAATWGSHEGSLLLWTFMLACWSVAVSVFSKHLPNEMVARVLGVMGLVSVGFLIFMLFTSNPFERMLPGAMEGSDL
NPLLQDPGMVCHPPMLYMGYVGFSVAFAFAISALLSGQMDATWARWSRPWTTVAWMFLTIGIMMGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLAVTEKRGSFKSWTVLLAICAFSLSLLGTFLVRSGVLTSVHAFATDPTRGIFILAFLVT
ITGGSLLLFAWRAPKIGLGGKFELVSRESMLLANNLLMMVAAGSILLGTLYPLFMDALELGKISVGPPYFEAVFVPLMTP
AVFLIGLGPLARWKQASLPELAVRLRWAFGVSAVTALVMPFIMGEWKLMVSFSLLMAFWVITSVIVSVIHRLRSTGKQGL
LAKLAAQSRSYYGMHAAHLGIAFFIIGVALVGGYETEKDVRMEIGDTVEVGGYTFRFNGVKKAPGPNYMSDIGNVDVLRD
GKKINVLEPEKRTYNASGMPMTEAAIDAGILRDLYVALGEPLENGAWVVRVYHKPFVDWIWFGCMLMAFGGFLAITDRRY
RLSSRKQRETVEIEERKVAKASKAGRKATAPMIARSKKA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=655, Percent_Identity=55.4198473282443, Blast_Score=668, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=578, Percent_Identity=37.5432525951557, Blast_Score=315, Evalue=6e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 74725; Mature: 74725

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGNFALILALLLALIQGTLPIIGAARGIPSWIALARPVVQGQFVFVAIAFFCLAYS
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FVNSDFSVVNVAQNSNSNLPLQYRFAATWGSHEGSLLLWTFMLACWSVAVSVFSKHLPNE
HHCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
MVARVLGVMGLVSVGFLIFMLFTSNPFERMLPGAMEGSDLNPLLQDPGMVCHPPMLYMGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHCCCCEECCHHHHHHH
VGFSVAFAFAISALLSGQMDATWARWSRPWTTVAWMFLTIGIMMGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLAVTEKRGSFKSWTVLLAICAFSLSLLGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFATDPTRGIFILAFLVTITGGSLLLFAWRAPKIGLGGKFELVSRESMLLANNLLMMV
HHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHH
AAGSILLGTLYPLFMDALELGKISVGPPYFEAVFVPLMTPAVFLIGLGPLARWKQASLPE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHH
LAVRLRWAFGVSAVTALVMPFIMGEWKLMVSFSLLMAFWVITSVIVSVIHRLRSTGKQGL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LAKLAAQSRSYYGMHAAHLGIAFFIIGVALVGGYETEKDVRMEIGDTVEVGGYTFRFNGV
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCCEEEECCEEEEECCC
KKAPGPNYMSDIGNVDVLRDGKKINVLEPEKRTYNASGMPMTEAAIDAGILRDLYVALGE
CCCCCCCHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PLENGAWVVRVYHKPFVDWIWFGCMLMAFGGFLAITDRRYRLSSRKQRETVEIEERKVAK
CCCCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCHHHHHHHHHH
ASKAGRKATAPMIARSKKA
HHHCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MIPELGNFALILALLLALIQGTLPIIGAARGIPSWIALARPVVQGQFVFVAIAFFCLAYS
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FVNSDFSVVNVAQNSNSNLPLQYRFAATWGSHEGSLLLWTFMLACWSVAVSVFSKHLPNE
HHCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
MVARVLGVMGLVSVGFLIFMLFTSNPFERMLPGAMEGSDLNPLLQDPGMVCHPPMLYMGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHCCCCEECCHHHHHHH
VGFSVAFAFAISALLSGQMDATWARWSRPWTTVAWMFLTIGIMMGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLAVTEKRGSFKSWTVLLAICAFSLSLLGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFATDPTRGIFILAFLVTITGGSLLLFAWRAPKIGLGGKFELVSRESMLLANNLLMMV
HHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHH
AAGSILLGTLYPLFMDALELGKISVGPPYFEAVFVPLMTPAVFLIGLGPLARWKQASLPE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHH
LAVRLRWAFGVSAVTALVMPFIMGEWKLMVSFSLLMAFWVITSVIVSVIHRLRSTGKQGL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LAKLAAQSRSYYGMHAAHLGIAFFIIGVALVGGYETEKDVRMEIGDTVEVGGYTFRFNGV
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCCEEEECCEEEEECCC
KKAPGPNYMSDIGNVDVLRDGKKINVLEPEKRTYNASGMPMTEAAIDAGILRDLYVALGE
CCCCCCCHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PLENGAWVVRVYHKPFVDWIWFGCMLMAFGGFLAITDRRYRLSSRKQRETVEIEERKVAK
CCCCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCHHHHHHHHHH
ASKAGRKATAPMIARSKKA
HHHCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]