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The map label for this gene is cycH [H]

Identifier: 82702335

GI number: 82702335

Start: 1391884

End: 1393194

Strand: Reverse

Name: cycH [H]

Synonym: Nmul_A1206

Alternate gene names: 82702335

Gene position: 1393194-1391884 (Counterclockwise)

Preceding gene: 82702336

Following gene: 82702334

Centisome position: 43.75

GC content: 57.21

Gene sequence:

>1311_bases
ATGACTTCATTCTGGATTGTAGCCGGCATATTTATTGTCGGCGCCCTGCTGTTCGTGTTGCCTACATTGTGGAGCAAGAA
GGATCGCGAGGCCGGCGTCGAACGGGATGCCACCAATATCGACGTTTATCGGGATCAGTTGGCGGAACTCGACAGCGATC
TGCGCAGCGACATCCTGACGCGGGAACAATACGAGCAAAGCAAGCGTGAGTTGCAGCAAAGAATGCTGCAGGATATTCCC
GAAGATGGCAATACGACGACCATGATAATGGGTGGAAGGCACAACGTGGCAACCATGACTGTCACCGCGCTCGTCCTGCC
TGTCCTCGCGGTTTCCCTTTACTTGGCGATAGGCAACACCAAGGCGTTGCTGCCGCAGCCTGCCGCGGAGCATCCATCGA
TGTCGTCCGAGCAAGGACAAGGAGGCCATCCCGATTTTTCCTCGGTGATGGAAAACCTCATTGCGAAGCTTGAGGACAAT
CCCGACAACGTCGAGGGATGGCTTATGCTTGGTCGGACCTACGCAATGATGCAGCGGTTCAACGAGGCAAAGGAAGCTTA
TGAAAAGGCGCTTGCCTTGACGCCCGACGACTCCGCCATCATCACGGATTACGCCGATATCGTGGCGATGACGAACAATG
GCAGTCTGGTCGGGAAGCCGACGGAACTGATCAAAAAGGCATTGAGCCTGGACCCCAATAACCCCAAGGCGCTGGCCTTG
GCAGGCACAGCCGAATTCGAGGAGAAGAGATACAAGGAGGCTGCCAGATATTGGGAAAAACTGGCAGCGCTGATTCCGCC
ATCCGAGGCTGAGCTGGTGCAATCCGTTAACGCCAGCATCGCAGAAGCAAAATCGCTGGCAGCAGGAAAAGGCAGCTTGG
TGGCTAGAGCGCCAGACCAGCCGGGTACTCAGACACCTCCTCCTGCAAATAAACAGGGATCAGCCTCGGGCGCGGGAGGC
GCTACCTCCGGCACACTTTCCGGCAAGGTAACACTCAGCCCCGGCCTCGCAAGCAAGGCCTCCCCCGGCGACAGCCTGTA
TATTTTTGCCCGTGCCAAAGTGGGACCAAAGGCACCCCTTGCGACCCTGCGTCTGCAAGTCAAGGATCTCCCGGCAAGCT
TTTCACTGAACGACTCCATGGCTCGGTCCGGCGTGCAGTTATCCACTTTCCCTGCCGAGGTGGTAGTAGGCGCCCGGATT
TCGAAATCGGGATCCCCAATGCCGCAAAGCGGCGACCTGCAAGGTTTGAGTCAGCCGGTAATGGTCGGCGCCAGCGGGAT
TAGCGTGGTTATCGATCAGCAGTTGCCTTAG

Upstream 100 bases:

>100_bases
CTCAAGCGCCGTCGCAAACACATCGAAGAACCCGCGCTATCCGAACAGCAACTCAAGCAGGCGGAAGCCTTGCTGAAGGA
AGGCAAGGGGTGATAAACGC

Downstream 100 bases:

>100_bases
TAGTCAGTACCCACTGGCAACAGCATAGCTATCTCTGAAGCATGCCCCTGGGGGGGCGCAAAGGCAGAGCCTTTGCGCCC
CCTTCTTTCTCTGGAAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MTSFWIVAGIFIVGALLFVLPTLWSKKDREAGVERDATNIDVYRDQLAELDSDLRSDILTREQYEQSKRELQQRMLQDIP
EDGNTTTMIMGGRHNVATMTVTALVLPVLAVSLYLAIGNTKALLPQPAAEHPSMSSEQGQGGHPDFSSVMENLIAKLEDN
PDNVEGWLMLGRTYAMMQRFNEAKEAYEKALALTPDDSAIITDYADIVAMTNNGSLVGKPTELIKKALSLDPNNPKALAL
AGTAEFEEKRYKEAARYWEKLAALIPPSEAELVQSVNASIAEAKSLAAGKGSLVARAPDQPGTQTPPPANKQGSASGAGG
ATSGTLSGKVTLSPGLASKASPGDSLYIFARAKVGPKAPLATLRLQVKDLPASFSLNDSMARSGVQLSTFPAEVVVGARI
SKSGSPMPQSGDLQGLSQPVMVGASGISVVIDQQLP

Sequences:

>Translated_436_residues
MTSFWIVAGIFIVGALLFVLPTLWSKKDREAGVERDATNIDVYRDQLAELDSDLRSDILTREQYEQSKRELQQRMLQDIP
EDGNTTTMIMGGRHNVATMTVTALVLPVLAVSLYLAIGNTKALLPQPAAEHPSMSSEQGQGGHPDFSSVMENLIAKLEDN
PDNVEGWLMLGRTYAMMQRFNEAKEAYEKALALTPDDSAIITDYADIVAMTNNGSLVGKPTELIKKALSLDPNNPKALAL
AGTAEFEEKRYKEAARYWEKLAALIPPSEAELVQSVNASIAEAKSLAAGKGSLVARAPDQPGTQTPPPANKQGSASGAGG
ATSGTLSGKVTLSPGLASKASPGDSLYIFARAKVGPKAPLATLRLQVKDLPASFSLNDSMARSGVQLSTFPAEVVVGARI
SKSGSPMPQSGDLQGLSQPVMVGASGISVVIDQQLP
>Mature_435_residues
TSFWIVAGIFIVGALLFVLPTLWSKKDREAGVERDATNIDVYRDQLAELDSDLRSDILTREQYEQSKRELQQRMLQDIPE
DGNTTTMIMGGRHNVATMTVTALVLPVLAVSLYLAIGNTKALLPQPAAEHPSMSSEQGQGGHPDFSSVMENLIAKLEDNP
DNVEGWLMLGRTYAMMQRFNEAKEAYEKALALTPDDSAIITDYADIVAMTNNGSLVGKPTELIKKALSLDPNNPKALALA
GTAEFEEKRYKEAARYWEKLAALIPPSEAELVQSVNASIAEAKSLAAGKGSLVARAPDQPGTQTPPPANKQGSASGAGGA
TSGTLSGKVTLSPGLASKASPGDSLYIFARAKVGPKAPLATLRLQVKDLPASFSLNDSMARSGVQLSTFPAEVVVGARIS
KSGSPMPQSGDLQGLSQPVMVGASGISVVIDQQLP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=131, Percent_Identity=30.5343511450382, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790513, Length=124, Percent_Identity=29.0322580645161, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46275; Mature: 46144

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSFWIVAGIFIVGALLFVLPTLWSKKDREAGVERDATNIDVYRDQLAELDSDLRSDILT
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
REQYEQSKRELQQRMLQDIPEDGNTTTMIMGGRHNVATMTVTALVLPVLAVSLYLAIGNT
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
KALLPQPAAEHPSMSSEQGQGGHPDFSSVMENLIAKLEDNPDNVEGWLMLGRTYAMMQRF
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
NEAKEAYEKALALTPDDSAIITDYADIVAMTNNGSLVGKPTELIKKALSLDPNNPKALAL
HHHHHHHHHHEECCCCCCEEEEECEEEEEECCCCCEECCHHHHHHHHHCCCCCCCCEEEE
AGTAEFEEKRYKEAARYWEKLAALIPPSEAELVQSVNASIAEAKSLAAGKGSLVARAPDQ
ECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
PGTQTPPPANKQGSASGAGGATSGTLSGKVTLSPGLASKASPGDSLYIFARAKVGPKAPL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCH
ATLRLQVKDLPASFSLNDSMARSGVQLSTFPAEVVVGARISKSGSPMPQSGDLQGLSQPV
HHEEEEEECCCCCCCCCHHHHHCCCEEECCCHHHHCCCEECCCCCCCCCCCCCCCCCCCE
MVGASGISVVIDQQLP
EECCCCCEEEECCCCC
>Mature Secondary Structure 
TSFWIVAGIFIVGALLFVLPTLWSKKDREAGVERDATNIDVYRDQLAELDSDLRSDILT
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
REQYEQSKRELQQRMLQDIPEDGNTTTMIMGGRHNVATMTVTALVLPVLAVSLYLAIGNT
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
KALLPQPAAEHPSMSSEQGQGGHPDFSSVMENLIAKLEDNPDNVEGWLMLGRTYAMMQRF
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
NEAKEAYEKALALTPDDSAIITDYADIVAMTNNGSLVGKPTELIKKALSLDPNNPKALAL
HHHHHHHHHHEECCCCCCEEEEECEEEEEECCCCCEECCHHHHHHHHHCCCCCCCCEEEE
AGTAEFEEKRYKEAARYWEKLAALIPPSEAELVQSVNASIAEAKSLAAGKGSLVARAPDQ
ECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
PGTQTPPPANKQGSASGAGGATSGTLSGKVTLSPGLASKASPGDSLYIFARAKVGPKAPL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCH
ATLRLQVKDLPASFSLNDSMARSGVQLSTFPAEVVVGARISKSGSPMPQSGDLQGLSQPV
HHEEEEEECCCCCCCCCHHHHHCCCEEECCCHHHHCCCEECCCCCCCCCCCCCCCCCCCE
MVGASGISVVIDQQLP
EECCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]