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The map label for this gene is smpB

Identifier: 82702332

GI number: 82702332

Start: 1389705

End: 1390148

Strand: Direct

Name: smpB

Synonym: Nmul_A1203

Alternate gene names: 82702332

Gene position: 1389705-1390148 (Clockwise)

Preceding gene: 82702327

Following gene: 82702333

Centisome position: 43.64

GC content: 51.58

Gene sequence:

>444_bases
ATGAGCATCGTCCAGAATAAGAAAGCTTTCCATGACTATTTTATCGAGGAGAAGCATGAAGCAGGGGCAGTTCTGGAAGG
ATGGGAAGTCAAGGCGATTCGCGCGGGACGAGCGCAGCTGAAGGAAGCCTATGTCATTATCCGGAACGGTGAATTGTTTC
TCATCGGGTGTCATGTCAGTCCCTTGCTGGCAGCTTCCACCCACATCCAGCCCGACCCGGTTCGTACGCGCAAGCTGTTG
TTGCATGCTGAGGAAATCAAACGGCTTATCGGCAAAGTGGAACGGGCGGGCTACACCCTGGTTCCACTGGATATCCATTA
TAAGAAAGGGCGAATCAAGCTTGAAATCGGTCTTGCAAAGGGCAAGAAGCAGCATGACAAACGCGAATCCGAGAAGCAGA
AAGAGTGGGAACGCGACAAGCAGCGGTTGATGCGTCCAAAATAA

Upstream 100 bases:

>100_bases
GATTTCTTGAACATCGTACCTCCTTATATCGTACCTTTTATTCTTTGCGCCCCTTTGCACTCTTTGTGAGCAGCGAGCAC
CTTGTCTTGAGAATCCCTGA

Downstream 100 bases:

>100_bases
TCCTCGATATTTTATAACCTTAGATCAAATTCCTAGCCATGCAGTTTGTCCAAACTTCAACACTTCCGCAAAAAACCGAT
CAAAAGTTTGCTGTGCAGAA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MSIVQNKKAFHDYFIEEKHEAGAVLEGWEVKAIRAGRAQLKEAYVIIRNGELFLIGCHVSPLLAASTHIQPDPVRTRKLL
LHAEEIKRLIGKVERAGYTLVPLDIHYKKGRIKLEIGLAKGKKQHDKRESEKQKEWERDKQRLMRPK

Sequences:

>Translated_147_residues
MSIVQNKKAFHDYFIEEKHEAGAVLEGWEVKAIRAGRAQLKEAYVIIRNGELFLIGCHVSPLLAASTHIQPDPVRTRKLL
LHAEEIKRLIGKVERAGYTLVPLDIHYKKGRIKLEIGLAKGKKQHDKRESEKQKEWERDKQRLMRPK
>Mature_146_residues
SIVQNKKAFHDYFIEEKHEAGAVLEGWEVKAIRAGRAQLKEAYVIIRNGELFLIGCHVSPLLAASTHIQPDPVRTRKLLL
HAEEIKRLIGKVERAGYTLVPLDIHYKKGRIKLEIGLAKGKKQHDKRESEKQKEWERDKQRLMRPK

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=144, Percent_Identity=52.7777777777778, Blast_Score=172, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_NITMU (Q2Y9R5)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_411898.1
- ProteinModelPortal:   Q2Y9R5
- SMR:   Q2Y9R5
- STRING:   Q2Y9R5
- GeneID:   3786134
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A1203
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   Q2Y9R5
- ProtClustDB:   PRK05422
- BioCyc:   NMUL323848:NMUL_A1203-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17038; Mature: 16907

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVQNKKAFHDYFIEEKHEAGAVLEGWEVKAIRAGRAQLKEAYVIIRNGELFLIGCHVS
CCCCCCHHHHHHHHHHCCCCCCCEECCCEEEEEHHHHHHHHEEEEEEECCCEEEEEECCC
PLLAASTHIQPDPVRTRKLLLHAEEIKRLIGKVERAGYTLVPLDIHYKKGRIKLEIGLAK
CHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEECCC
GKKQHDKRESEKQKEWERDKQRLMRPK
CCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SIVQNKKAFHDYFIEEKHEAGAVLEGWEVKAIRAGRAQLKEAYVIIRNGELFLIGCHVS
CCCCCHHHHHHHHHHCCCCCCCEECCCEEEEEHHHHHHHHEEEEEEECCCEEEEEECCC
PLLAASTHIQPDPVRTRKLLLHAEEIKRLIGKVERAGYTLVPLDIHYKKGRIKLEIGLAK
CHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEECCC
GKKQHDKRESEKQKEWERDKQRLMRPK
CCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA