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The map label for this gene is yciR [C]

Identifier: 82702267

GI number: 82702267

Start: 1308742

End: 1311012

Strand: Direct

Name: yciR [C]

Synonym: Nmul_A1138

Alternate gene names: 82702267

Gene position: 1308742-1311012 (Clockwise)

Preceding gene: 82702265

Following gene: 82702268

Centisome position: 41.1

GC content: 51.52

Gene sequence:

>2271_bases
ATGACGTCTTCTTCCGATATTCTTAATGCCCGGATTTTAGTGGTCGACGACCGGAAAGGTAATGCCGAGCTCCTTCATGG
CATGCTTTCGAGCGCAGGTTATACTTCAATCACCTGCACCATGAATCCCCGGGAAGTATGCGATCTTCATCGCGCCAATC
GGTATGATCTCATCCTCCTCGATCTGATGATGCCGGGAATGGATGGATTTCAGGTGATGGAATGCTTGAGAGAAATAGAA
TCAAGCGGGTTACAGGTTCAATCTCAAGGTGAGCGCACGGCTCTTCCCGTCCTGGTAATCACTGCCCAGCCGCAGCATAA
GGAGAGAGCCTTGCGGGCAGGGGCCAAAGGTTTTATTACTAAACCTTTTGACCGTCTGCAGATGCTGACCCATATTCATG
ACGTGCTTGAGATCAGGCAGTTGCAGAAACAGCTGCAGAAATTTGCGGTACGCAGTGAAGGTGTGTCAGAGGAGAAAATT
TTTCCCCGGGAAACCGGGGATTTGTTTGATCAGCTTGCGGGTAACCTTCCCCAGGTGTTCTGGATCTGGGATGTTCACGA
CCAAACCTTTCGCTACATTAACCCTGAGTGGGAGAAAATGACAGGGCAGCGGGTTGGCCGGGGAGATAGGCTGGAAAAGA
TTTTCGAAGCCGTGCACCCCGAGGACATGGAGCGTGTCCTGCGCGAAGCGGCAGATCTGCCACGGGGGGGAGTGGACCAT
GATTACCGGTTGCTATTACCGGATATGTCGATACGCTGGGTTCATTCGCGCACTTTCCCTATCAAGGATTCAGCCGGCGT
GCATCGAATCGTAGGGGTAATGGATGACATCACCCAGCGCAAGCAGGCCGACCAGCAGTTGCTGCAGGTATCCCGTTATG
ACGCGCTCACGCATCTTCCCAACCGTATCCTGTTTTATGAGTCACTGCGCAAGGTAATCAAACAATCTGAAATGAATCAT
CGGATCGTTTCGGTATTGTTTCTCGATATCGATAACTTCAAAAATATAAATGATACGCTGGGTTTCGCACTGGGAGATGA
ACTGCTGCGTGAGTTCAGTCTTCGTTTGCTGGAATGCCTGCGTGTAACCGATATCGTCGCGCGCATCGGAGGAGATGAAT
TTGGTTGCATTCTTGTCAGTGCTGACGATTTGGGAAATGCGGGCCTGGTGGCAAGCAAGATCAGGGAAGCGTTGCGTCAA
CCCTTCGATTTGCAGGGACATCAGGTCACGGTAACAGCGAGTATCGGAATCAGTGTGTACCCGATAGATTCAATCGATGC
CGATACGCTCGTAAAAAATGGGGATACTGCGATGTATCAGTCCAAGACGGCAGGCAGGGATACCTATCGCTTCTTTACGC
CGGAAATGAATATTCGGGCAATCGAGAAGCTCGACCAGGAAAATGCTTTGCGGAAGGCGCTCGATCGGGAGGAGTTTGTC
TTGCATTATCAGCCGAAAGTGGATCTCTCCAACGGATGGGTCACCGGCATGGAAGCGCTCCTGAGATGGAAGCGGCCCGA
ACATGGCGTGGTGGAGCCGCTGGAATTCATTCCGGCACTCGAACAGACTGGATTGATAACCCGAGTGGGCGCCTGGGTTA
TCGAGAGCGTATGCAGACAGATTGCGGAGTGGCGTCATGCGGGGATAGGAGAAATCCCGGTTTCAGTCAATGTCTCGGGA
AGGCAGTTTTCGCGGAGCACCTTGAACCAGGATGTCATTCGGGCAACTCAGGCGAACGGCATCCAACCCGCACTCCTCGA
ATTCGAATTGCAGACGGAAAGAGCATTGCGGGAAAACAGCATCGATTCCGATCTGCTGGAACTGGAGCTGACGGAAAGCT
CTTTGATGATGCATGCAAAGAAGACAGTAAGTATCCTACAGAGATTGAAGGCACTCGGAATCCAGATCTCGATCGATGAC
TTCGGAACCGGTTATTCAAGCCTGGCATACGTAAAACGGTTTCCAATAGATGTGCTGAAGATCGACCGTTCTTTTATCCA
GGAGATCACCACAAATTCCGCCGATGCCGCCATTACGACTGCAATCATCGACATGGCCCACAGCCTTCATGTGAGAGTGG
TAGCGGAGGGTGTGGAAACTGCCGAACAATTTGATTTTCTGAAAGGAAGAGGGTGCGACGAAGTACAGGGTTTCTACTTG
TCACCTCCGCTCCCTGCAAACGAAATATCCCAATTGCTATTGAGCGGAAATCGGCGGCTTAAACCCACTCCATGCCGGCC
CAATACTGGCGAATCTGCCTGTAGTTCTTGA

Upstream 100 bases:

>100_bases
ACAGATTGGGTGTGAAGCGCGGATTGGATTGGGAATCGAACAAAAATTTATTAGCCCTGGACGGATCCAGTGTTAAACAG
GTATTAAAACGGAAAATTCG

Downstream 100 bases:

>100_bases
GATTGAGCCTGGCAGATTTTCCCGTCACCGCCCCCAAGGGTGTTCAGGGATTCCTTGACGTCTCATCGAGCGCCACCATG
TCGCTAGTCGGGCGCTACCC

Product: response regulator receiver /GGDEF/PAS/PAC domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 756; Mature: 755

Protein sequence:

>756_residues
MTSSSDILNARILVVDDRKGNAELLHGMLSSAGYTSITCTMNPREVCDLHRANRYDLILLDLMMPGMDGFQVMECLREIE
SSGLQVQSQGERTALPVLVITAQPQHKERALRAGAKGFITKPFDRLQMLTHIHDVLEIRQLQKQLQKFAVRSEGVSEEKI
FPRETGDLFDQLAGNLPQVFWIWDVHDQTFRYINPEWEKMTGQRVGRGDRLEKIFEAVHPEDMERVLREAADLPRGGVDH
DYRLLLPDMSIRWVHSRTFPIKDSAGVHRIVGVMDDITQRKQADQQLLQVSRYDALTHLPNRILFYESLRKVIKQSEMNH
RIVSVLFLDIDNFKNINDTLGFALGDELLREFSLRLLECLRVTDIVARIGGDEFGCILVSADDLGNAGLVASKIREALRQ
PFDLQGHQVTVTASIGISVYPIDSIDADTLVKNGDTAMYQSKTAGRDTYRFFTPEMNIRAIEKLDQENALRKALDREEFV
LHYQPKVDLSNGWVTGMEALLRWKRPEHGVVEPLEFIPALEQTGLITRVGAWVIESVCRQIAEWRHAGIGEIPVSVNVSG
RQFSRSTLNQDVIRATQANGIQPALLEFELQTERALRENSIDSDLLELELTESSLMMHAKKTVSILQRLKALGIQISIDD
FGTGYSSLAYVKRFPIDVLKIDRSFIQEITTNSADAAITTAIIDMAHSLHVRVVAEGVETAEQFDFLKGRGCDEVQGFYL
SPPLPANEISQLLLSGNRRLKPTPCRPNTGESACSS

Sequences:

>Translated_756_residues
MTSSSDILNARILVVDDRKGNAELLHGMLSSAGYTSITCTMNPREVCDLHRANRYDLILLDLMMPGMDGFQVMECLREIE
SSGLQVQSQGERTALPVLVITAQPQHKERALRAGAKGFITKPFDRLQMLTHIHDVLEIRQLQKQLQKFAVRSEGVSEEKI
FPRETGDLFDQLAGNLPQVFWIWDVHDQTFRYINPEWEKMTGQRVGRGDRLEKIFEAVHPEDMERVLREAADLPRGGVDH
DYRLLLPDMSIRWVHSRTFPIKDSAGVHRIVGVMDDITQRKQADQQLLQVSRYDALTHLPNRILFYESLRKVIKQSEMNH
RIVSVLFLDIDNFKNINDTLGFALGDELLREFSLRLLECLRVTDIVARIGGDEFGCILVSADDLGNAGLVASKIREALRQ
PFDLQGHQVTVTASIGISVYPIDSIDADTLVKNGDTAMYQSKTAGRDTYRFFTPEMNIRAIEKLDQENALRKALDREEFV
LHYQPKVDLSNGWVTGMEALLRWKRPEHGVVEPLEFIPALEQTGLITRVGAWVIESVCRQIAEWRHAGIGEIPVSVNVSG
RQFSRSTLNQDVIRATQANGIQPALLEFELQTERALRENSIDSDLLELELTESSLMMHAKKTVSILQRLKALGIQISIDD
FGTGYSSLAYVKRFPIDVLKIDRSFIQEITTNSADAAITTAIIDMAHSLHVRVVAEGVETAEQFDFLKGRGCDEVQGFYL
SPPLPANEISQLLLSGNRRLKPTPCRPNTGESACSS
>Mature_755_residues
TSSSDILNARILVVDDRKGNAELLHGMLSSAGYTSITCTMNPREVCDLHRANRYDLILLDLMMPGMDGFQVMECLREIES
SGLQVQSQGERTALPVLVITAQPQHKERALRAGAKGFITKPFDRLQMLTHIHDVLEIRQLQKQLQKFAVRSEGVSEEKIF
PRETGDLFDQLAGNLPQVFWIWDVHDQTFRYINPEWEKMTGQRVGRGDRLEKIFEAVHPEDMERVLREAADLPRGGVDHD
YRLLLPDMSIRWVHSRTFPIKDSAGVHRIVGVMDDITQRKQADQQLLQVSRYDALTHLPNRILFYESLRKVIKQSEMNHR
IVSVLFLDIDNFKNINDTLGFALGDELLREFSLRLLECLRVTDIVARIGGDEFGCILVSADDLGNAGLVASKIREALRQP
FDLQGHQVTVTASIGISVYPIDSIDADTLVKNGDTAMYQSKTAGRDTYRFFTPEMNIRAIEKLDQENALRKALDREEFVL
HYQPKVDLSNGWVTGMEALLRWKRPEHGVVEPLEFIPALEQTGLITRVGAWVIESVCRQIAEWRHAGIGEIPVSVNVSGR
QFSRSTLNQDVIRATQANGIQPALLEFELQTERALRENSIDSDLLELELTESSLMMHAKKTVSILQRLKALGIQISIDDF
GTGYSSLAYVKRFPIDVLKIDRSFIQEITTNSADAAITTAIIDMAHSLHVRVVAEGVETAEQFDFLKGRGCDEVQGFYLS
PPLPANEISQLLLSGNRRLKPTPCRPNTGESACSS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=453, Percent_Identity=39.514348785872, Blast_Score=325, Evalue=7e-90,
Organism=Escherichia coli, GI87081921, Length=472, Percent_Identity=33.4745762711864, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI226510982, Length=454, Percent_Identity=28.6343612334802, Blast_Score=187, Evalue=3e-48,
Organism=Escherichia coli, GI1790496, Length=270, Percent_Identity=32.962962962963, Blast_Score=159, Evalue=7e-40,
Organism=Escherichia coli, GI1788502, Length=261, Percent_Identity=31.8007662835249, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI1786507, Length=286, Percent_Identity=28.6713286713287, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081845, Length=270, Percent_Identity=33.3333333333333, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1788381, Length=542, Percent_Identity=25.2767527675277, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081743, Length=264, Percent_Identity=32.5757575757576, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1788849, Length=270, Percent_Identity=32.962962962963, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI87081980, Length=279, Percent_Identity=31.1827956989247, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1787055, Length=256, Percent_Identity=29.296875, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=258, Percent_Identity=29.4573643410853, Blast_Score=109, Evalue=8e-25,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=37.4269005847953, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081881, Length=226, Percent_Identity=31.858407079646, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=34.2696629213483, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=194, Percent_Identity=33.5051546391753, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=31.3953488372093, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=32.9113924050633, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=32.5301204819277, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=198, Percent_Identity=28.7878787878788, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787410, Length=122, Percent_Identity=31.9672131147541, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=174, Percent_Identity=32.183908045977, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 85225; Mature: 85093

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSSDILNARILVVDDRKGNAELLHGMLSSAGYTSITCTMNPREVCDLHRANRYDLILL
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEE
DLMMPGMDGFQVMECLREIESSGLQVQSQGERTALPVLVITAQPQHKERALRAGAKGFIT
EHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCC
KPFDRLQMLTHIHDVLEIRQLQKQLQKFAVRSEGVSEEKIFPRETGDLFDQLAGNLPQVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEE
WIWDVHDQTFRYINPEWEKMTGQRVGRGDRLEKIFEAVHPEDMERVLREAADLPRGGVDH
EEEECCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC
DYRLLLPDMSIRWVHSRTFPIKDSAGVHRIVGVMDDITQRKQADQQLLQVSRYDALTHLP
CCEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NRILFYESLRKVIKQSEMNHRIVSVLFLDIDNFKNINDTLGFALGDELLREFSLRLLECL
HHHHHHHHHHHHHHHHHCCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RVTDIVARIGGDEFGCILVSADDLGNAGLVASKIREALRQPFDLQGHQVTVTASIGISVY
HHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEE
PIDSIDADTLVKNGDTAMYQSKTAGRDTYRFFTPEMNIRAIEKLDQENALRKALDREEFV
ECCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEE
LHYQPKVDLSNGWVTGMEALLRWKRPEHGVVEPLEFIPALEQTGLITRVGAWVIESVCRQ
EEECCCEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IAEWRHAGIGEIPVSVNVSGRQFSRSTLNQDVIRATQANGIQPALLEFELQTERALRENS
HHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHEEEHHHHHHHHHCC
IDSDLLELELTESSLMMHAKKTVSILQRLKALGIQISIDDFGTGYSSLAYVKRFPIDVLK
CCCHHEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHH
IDRSFIQEITTNSADAAITTAIIDMAHSLHVRVVAEGVETAEQFDFLKGRGCDEVQGFYL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCHHCCEEE
SPPLPANEISQLLLSGNRRLKPTPCRPNTGESACSS
CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSSSDILNARILVVDDRKGNAELLHGMLSSAGYTSITCTMNPREVCDLHRANRYDLILL
CCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEE
DLMMPGMDGFQVMECLREIESSGLQVQSQGERTALPVLVITAQPQHKERALRAGAKGFIT
EHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCC
KPFDRLQMLTHIHDVLEIRQLQKQLQKFAVRSEGVSEEKIFPRETGDLFDQLAGNLPQVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEE
WIWDVHDQTFRYINPEWEKMTGQRVGRGDRLEKIFEAVHPEDMERVLREAADLPRGGVDH
EEEECCCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCC
DYRLLLPDMSIRWVHSRTFPIKDSAGVHRIVGVMDDITQRKQADQQLLQVSRYDALTHLP
CCEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NRILFYESLRKVIKQSEMNHRIVSVLFLDIDNFKNINDTLGFALGDELLREFSLRLLECL
HHHHHHHHHHHHHHHHHCCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RVTDIVARIGGDEFGCILVSADDLGNAGLVASKIREALRQPFDLQGHQVTVTASIGISVY
HHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEE
PIDSIDADTLVKNGDTAMYQSKTAGRDTYRFFTPEMNIRAIEKLDQENALRKALDREEFV
ECCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEE
LHYQPKVDLSNGWVTGMEALLRWKRPEHGVVEPLEFIPALEQTGLITRVGAWVIESVCRQ
EEECCCEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IAEWRHAGIGEIPVSVNVSGRQFSRSTLNQDVIRATQANGIQPALLEFELQTERALRENS
HHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHEEEHHHHHHHHHCC
IDSDLLELELTESSLMMHAKKTVSILQRLKALGIQISIDDFGTGYSSLAYVKRFPIDVLK
CCCHHEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHH
IDRSFIQEITTNSADAAITTAIIDMAHSLHVRVVAEGVETAEQFDFLKGRGCDEVQGFYL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCHHCCEEE
SPPLPANEISQLLLSGNRRLKPTPCRPNTGESACSS
CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]