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The map label for this gene is slmA [H]

Identifier: 82702246

GI number: 82702246

Start: 1288232

End: 1288834

Strand: Direct

Name: slmA [H]

Synonym: Nmul_A1117

Alternate gene names: 82702246

Gene position: 1288232-1288834 (Clockwise)

Preceding gene: 82702245

Following gene: 82702251

Centisome position: 40.46

GC content: 48.42

Gene sequence:

>603_bases
ATGACGGGCAGGCCTGGGGAAAGAAAAGATCAGATTCTGCAGGTTCTGGCAGAGATGCTGGAAGAGCCTAGGGCAGGTAA
AATTACCACGGCGGCTCTGGCGGCTAAGCTGGATGTTTCCGAGGCTGCGCTTTACCGTCATTTCGCCAGCAAAGCACAAA
TGTTTGACAGTTTGATCGAGTTCATAGAAAAGACCCTGTTCACTTTCATCAATAAGATGGTAGCGGAAGAAAAAAGCGGC
ATCAGGCAGATCGAAGGCATTCTTGCTCTATTGCTTGGTTTTGCAAAGAAAAATCCTGGAATGACCAGAGTGTTGATTGG
GGATGCTTTGATAAACGAGAATGAGCGTTTGCAAAATCGCGTCACCCAACTGCACGACCGTCTGGAGGCAACGCTCAAGC
AGGCATTACGTTTTGCAGTAAGCCAGCGGGAAATAGTAGAGGATCTGGACGTATCCGCTCACGCAAATATGCTGCTATGT
TATGTTGTGGGCCGTTGGCACCAGTTTGCCAAAAGCGGTTTCAAACGCGATCCGATGGAATATTGGGAAGCACAGTTTAG
AGAAATAGTTTCCAGCAATTCCTTCGGGCAGGTGGTTTCGTAG

Upstream 100 bases:

>100_bases
CGTTTTTACAATCTCATCTCACGCACTGCAGCCCATCCATGTCGCGCGGTAGTTATAATAGGTGGCAGAGCTTGAAATTC
GGTATTGAAGCGAGGAATCA

Downstream 100 bases:

>100_bases
CAATGCTGTATTGGGAGGATTGCAATCCTTCTTCTGCCTTTTCTTCGAGGAGCAATGCTTCCTCATTACGCCATCGCAAT
ATATTGCACCAAAACACTGT

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTGRPGERKDQILQVLAEMLEEPRAGKITTAALAAKLDVSEAALYRHFASKAQMFDSLIEFIEKTLFTFINKMVAEEKSG
IRQIEGILALLLGFAKKNPGMTRVLIGDALINENERLQNRVTQLHDRLEATLKQALRFAVSQREIVEDLDVSAHANMLLC
YVVGRWHQFAKSGFKRDPMEYWEAQFREIVSSNSFGQVVS

Sequences:

>Translated_200_residues
MTGRPGERKDQILQVLAEMLEEPRAGKITTAALAAKLDVSEAALYRHFASKAQMFDSLIEFIEKTLFTFINKMVAEEKSG
IRQIEGILALLLGFAKKNPGMTRVLIGDALINENERLQNRVTQLHDRLEATLKQALRFAVSQREIVEDLDVSAHANMLLC
YVVGRWHQFAKSGFKRDPMEYWEAQFREIVSSNSFGQVVS
>Mature_199_residues
TGRPGERKDQILQVLAEMLEEPRAGKITTAALAAKLDVSEAALYRHFASKAQMFDSLIEFIEKTLFTFINKMVAEEKSGI
RQIEGILALLLGFAKKNPGMTRVLIGDALINENERLQNRVTQLHDRLEATLKQALRFAVSQREIVEDLDVSAHANMLLCY
VVGRWHQFAKSGFKRDPMEYWEAQFREIVSSNSFGQVVS

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=180, Percent_Identity=46.1111111111111, Blast_Score=139, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22658; Mature: 22527

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGRPGERKDQILQVLAEMLEEPRAGKITTAALAAKLDVSEAALYRHFASKAQMFDSLIE
CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIEKTLFTFINKMVAEEKSGIRQIEGILALLLGFAKKNPGMTRVLIGDALINENERLQNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH
VTQLHDRLEATLKQALRFAVSQREIVEDLDVSAHANMLLCYVVGRWHQFAKSGFKRDPME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
YWEAQFREIVSSNSFGQVVS
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TGRPGERKDQILQVLAEMLEEPRAGKITTAALAAKLDVSEAALYRHFASKAQMFDSLIE
CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIEKTLFTFINKMVAEEKSGIRQIEGILALLLGFAKKNPGMTRVLIGDALINENERLQNR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHH
VTQLHDRLEATLKQALRFAVSQREIVEDLDVSAHANMLLCYVVGRWHQFAKSGFKRDPME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
YWEAQFREIVSSNSFGQVVS
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA