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The map label for this gene is ybiR [H]

Identifier: 82702234

GI number: 82702234

Start: 1272948

End: 1274057

Strand: Reverse

Name: ybiR [H]

Synonym: Nmul_A1105

Alternate gene names: 82702234

Gene position: 1274057-1272948 (Counterclockwise)

Preceding gene: 82702235

Following gene: 82702197

Centisome position: 40.01

GC content: 50.09

Gene sequence:

>1110_bases
ATGATTCAATTATCCATTCAAATCTGGCGGAAGGATTATCTGCTGTGGTTTCTTGCCGGACTCCTCACCGTCCTGACCAT
AGCGGAGCCTGCACGACTCTTTTCATATCCTGGCCTCGTAGACTGGCCCACCCTCAGTGGCGTAGCGGGATTGCTCATAC
TTGCCAAAGGTATTGAACTCTCCGGCTATCTGCACCGCCTCGGCAAACGACTGATAGAAATCATGCGCACCAGCCGATCC
CTTGCAGTATTGCTCGTTCTGGCAGCAGCGTTACTTTCCATGGCGCTGACCAACGATGTCGCCCTGTTCATAATGGTGCC
GTTGACCACGGGCTTGCATGGTGCCGGCGTGATTCCTGTGACGCGCCTCATCGTGGTCGAGGCATTGGCTGTAAATGCAG
GTTCAGCTCTTACACCGATCGGCAACCCACAAAACCTGTTTTTGTGGAAAGTATCCGGTGTATCCTTTCACGAATACGTA
CAAGCGATGCTGCCTCTAGCGCTCATCCTCATCACCAGTCTCCTGGTGTTGATCGCATTCATGTTCGATAGCAATCGCAT
TCAGGTCAGGGAAGAGGTTGATATGCCAATAGCGAACAACAGGCTATTCCATTCATCCTTGATTCTCTATCTACCATTTC
TGATTCTTATTGATCTCCATCAGGCGGAACTGGCGGTTTTGCTGATACTCATGGTCTTCTTTATCCGGCATCGCAGCATT
CTCGGGAATGTGGATTGGGGCCTCATTCTCGTACTTGCCCTCATGTTCGTGAACATGCGCCTTATTGCTGATAGCCACAC
TATTCATTCATTTTTTACAGAATTGAGGCTGGACGAGCCTGAGCGGCTTTACTTTGCGGGGATCGGGCTTGCACAGATCA
TGAGCAATGTGCCTGCTGCAATTTTATTGGCCGGTTATTCAAGCAACTGGCAACTGATTGCCTACGCAGTGAACGTTGGG
GGATTTGGCTTAGTATTGGGCTCTCTCGCCAATTTAATAGCCCTACGGCTCGCCCGGGACAGAAAAGCATGGTTGATATT
TCATGCCTACTCCCTGCCATTTCTGCTCGTCACGGGTACTTTCGTCTATCTGTTGCTATTCATTGGTTAA

Upstream 100 bases:

>100_bases
ATGAGACTGCCAAGCCAATATTGCGTCCAATCGGCAGCATTCATTGCTTATAAATTTGGAAGCCTGCGATTCTTCGGCGC
TTCCTCAGTAAGATGCGGGA

Downstream 100 bases:

>100_bases
CTTCCATTGGAGTTGCCCGTTGCCGCACCTCCTCTATAAGGAAGAGAGAGCAGGCGCGGTTCTGCGTGCAATAAATGGAA
ACCTCTTCACGCGTCCAGAT

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MIQLSIQIWRKDYLLWFLAGLLTVLTIAEPARLFSYPGLVDWPTLSGVAGLLILAKGIELSGYLHRLGKRLIEIMRTSRS
LAVLLVLAAALLSMALTNDVALFIMVPLTTGLHGAGVIPVTRLIVVEALAVNAGSALTPIGNPQNLFLWKVSGVSFHEYV
QAMLPLALILITSLLVLIAFMFDSNRIQVREEVDMPIANNRLFHSSLILYLPFLILIDLHQAELAVLLILMVFFIRHRSI
LGNVDWGLILVLALMFVNMRLIADSHTIHSFFTELRLDEPERLYFAGIGLAQIMSNVPAAILLAGYSSNWQLIAYAVNVG
GFGLVLGSLANLIALRLARDRKAWLIFHAYSLPFLLVTGTFVYLLLFIG

Sequences:

>Translated_369_residues
MIQLSIQIWRKDYLLWFLAGLLTVLTIAEPARLFSYPGLVDWPTLSGVAGLLILAKGIELSGYLHRLGKRLIEIMRTSRS
LAVLLVLAAALLSMALTNDVALFIMVPLTTGLHGAGVIPVTRLIVVEALAVNAGSALTPIGNPQNLFLWKVSGVSFHEYV
QAMLPLALILITSLLVLIAFMFDSNRIQVREEVDMPIANNRLFHSSLILYLPFLILIDLHQAELAVLLILMVFFIRHRSI
LGNVDWGLILVLALMFVNMRLIADSHTIHSFFTELRLDEPERLYFAGIGLAQIMSNVPAAILLAGYSSNWQLIAYAVNVG
GFGLVLGSLANLIALRLARDRKAWLIFHAYSLPFLLVTGTFVYLLLFIG
>Mature_369_residues
MIQLSIQIWRKDYLLWFLAGLLTVLTIAEPARLFSYPGLVDWPTLSGVAGLLILAKGIELSGYLHRLGKRLIEIMRTSRS
LAVLLVLAAALLSMALTNDVALFIMVPLTTGLHGAGVIPVTRLIVVEALAVNAGSALTPIGNPQNLFLWKVSGVSFHEYV
QAMLPLALILITSLLVLIAFMFDSNRIQVREEVDMPIANNRLFHSSLILYLPFLILIDLHQAELAVLLILMVFFIRHRSI
LGNVDWGLILVLALMFVNMRLIADSHTIHSFFTELRLDEPERLYFAGIGLAQIMSNVPAAILLAGYSSNWQLIAYAVNVG
GFGLVLGSLANLIALRLARDRKAWLIFHAYSLPFLLVTGTFVYLLLFIG

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=335, Percent_Identity=45.9701492537313, Blast_Score=261, Evalue=7e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40838; Mature: 40838

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLSIQIWRKDYLLWFLAGLLTVLTIAEPARLFSYPGLVDWPTLSGVAGLLILAKGIEL
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCH
SGYLHRLGKRLIEIMRTSRSLAVLLVLAAALLSMALTNDVALFIMVPLTTGLHGAGVIPV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHCCCCCCCHHHH
TRLIVVEALAVNAGSALTPIGNPQNLFLWKVSGVSFHEYVQAMLPLALILITSLLVLIAF
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MFDSNRIQVREEVDMPIANNRLFHSSLILYLPFLILIDLHQAELAVLLILMVFFIRHRSI
HHCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LGNVDWGLILVLALMFVNMRLIADSHTIHSFFTELRLDEPERLYFAGIGLAQIMSNVPAA
HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCE
ILLAGYSSNWQLIAYAVNVGGFGLVLGSLANLIALRLARDRKAWLIFHAYSLPFLLVTGT
EEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHH
FVYLLLFIG
HHHHHHHCC
>Mature Secondary Structure
MIQLSIQIWRKDYLLWFLAGLLTVLTIAEPARLFSYPGLVDWPTLSGVAGLLILAKGIEL
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCH
SGYLHRLGKRLIEIMRTSRSLAVLLVLAAALLSMALTNDVALFIMVPLTTGLHGAGVIPV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHCCCCCCCHHHH
TRLIVVEALAVNAGSALTPIGNPQNLFLWKVSGVSFHEYVQAMLPLALILITSLLVLIAF
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MFDSNRIQVREEVDMPIANNRLFHSSLILYLPFLILIDLHQAELAVLLILMVFFIRHRSI
HHCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LGNVDWGLILVLALMFVNMRLIADSHTIHSFFTELRLDEPERLYFAGIGLAQIMSNVPAA
HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCE
ILLAGYSSNWQLIAYAVNVGGFGLVLGSLANLIALRLARDRKAWLIFHAYSLPFLLVTGT
EEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHH
FVYLLLFIG
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]