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The map label for this gene is exbD1 [H]

Identifier: 82702176

GI number: 82702176

Start: 1209759

End: 1210178

Strand: Reverse

Name: exbD1 [H]

Synonym: Nmul_A1047

Alternate gene names: 82702176

Gene position: 1210178-1209759 (Counterclockwise)

Preceding gene: 82702177

Following gene: 82702175

Centisome position: 38.01

GC content: 51.67

Gene sequence:

>420_bases
ATGGCATTCGGCAGCATGAACAGCAGTAACCGGCCGCTCCCCATGGCTGAAATCAACGTCGTACCCCTGGTGGACGTGAT
GCTGGTACTACTGGTGATTTTTATCATTACGGCGCCGTTGCTCACGCATTCCGTTAAAATCGACCTGCCCAAGGCATCCA
GCAGTCCAAACATCACTCAACCGGATCATGTGGAATTCGCCTTGCGTGACGACTCCACTCTTTACTGGAACGGTGAATCG
GTTACAATGGATCAACTGCCTCCGCGCTTCACTGAAGCGGTAGGGCAAAATCCCAATATCGAGCTTCATATCCGCGCCGA
CAAACATGTCCACTACGAGCATGTAGCGCAGGTGATGTCTATTGCAGCAAAGGCGGGACTGGTGCGAATAGGTTTCGTTA
CCGACCCTTCACAAAAATAA

Upstream 100 bases:

>100_bases
TTGGAACAAAAACAGGCGGGGCTCCCGGTGACGAGCGTTCCTTGCGGGTGGTTACCCCGCTGATTTCCCCGGCAGCGGCA
CCGGGCGAAAGGAGGCTGTA

Downstream 100 bases:

>100_bases
CAATTGCCGAAGCGCGGCCGCGGAAGGAATATCATTACGGTCAATTCAAGCGATGACAGATACGCCGGCGAACGCTCCGT
CATTGCGGGGATAATGGTTG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MAFGSMNSSNRPLPMAEINVVPLVDVMLVLLVIFIITAPLLTHSVKIDLPKASSSPNITQPDHVEFALRDDSTLYWNGES
VTMDQLPPRFTEAVGQNPNIELHIRADKHVHYEHVAQVMSIAAKAGLVRIGFVTDPSQK

Sequences:

>Translated_139_residues
MAFGSMNSSNRPLPMAEINVVPLVDVMLVLLVIFIITAPLLTHSVKIDLPKASSSPNITQPDHVEFALRDDSTLYWNGES
VTMDQLPPRFTEAVGQNPNIELHIRADKHVHYEHVAQVMSIAAKAGLVRIGFVTDPSQK
>Mature_138_residues
AFGSMNSSNRPLPMAEINVVPLVDVMLVLLVIFIITAPLLTHSVKIDLPKASSSPNITQPDHVEFALRDDSTLYWNGESV
TMDQLPPRFTEAVGQNPNIELHIRADKHVHYEHVAQVMSIAAKAGLVRIGFVTDPSQK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=125, Percent_Identity=34.4, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15324; Mature: 15193

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGSMNSSNRPLPMAEINVVPLVDVMLVLLVIFIITAPLLTHSVKIDLPKASSSPNITQ
CCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCC
PDHVEFALRDDSTLYWNGESVTMDQLPPRFTEAVGQNPNIELHIRADKHVHYEHVAQVMS
CCCEEEEEECCCEEEECCCEEEHHHCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
IAAKAGLVRIGFVTDPSQK
HHHHCCEEEEEEECCCCCC
>Mature Secondary Structure 
AFGSMNSSNRPLPMAEINVVPLVDVMLVLLVIFIITAPLLTHSVKIDLPKASSSPNITQ
CCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCC
PDHVEFALRDDSTLYWNGESVTMDQLPPRFTEAVGQNPNIELHIRADKHVHYEHVAQVMS
CCCEEEEEECCCEEEECCCEEEHHHCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
IAAKAGLVRIGFVTDPSQK
HHHHCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]