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The map label for this gene is rhaS [C]

Identifier: 82702045

GI number: 82702045

Start: 1042708

End: 1043715

Strand: Direct

Name: rhaS [C]

Synonym: Nmul_A0916

Alternate gene names: 82702045

Gene position: 1042708-1043715 (Clockwise)

Preceding gene: 82702043

Following gene: 82702046

Centisome position: 32.75

GC content: 56.94

Gene sequence:

>1008_bases
ATGCATATTCATATTCTTGCGCTCGACCAGGTTTTCGACACCGGATTATCAACGCTCCTGGACACCCTGAGTATCGCGAA
CGATCTCGCGGTTTCTGCCAACGCAGTGACACGATTTGACCTGACGATCGCGGGGGTGCGCCGGAATATTCGTACCAGTC
AGGGATTTTCTGTACCGGTAGTGCCAGCGGCGCGATGCAGCCCGCCGGATGTGGTATTGATTCCGGCGCTTGGGGCAAAA
ATGCCGGAAACGCTGCGGTTGGCGCTTGAGCGGCCGGATGTGTGCGAGGCGGGCGACCTTTTGCGGCAGTGGTCCAAAGA
GGACGTTCTTATCGGCGCCGCCTGCACTGGAACCTTCGTTCTCGCCGATACTTTGCTTCTCAATGACCGGAGCGCTACCA
CATCATGGTGGCTTAGCCCCTTGTTTCGGGAACGTTATCCCCGCGTGCGCCTGGAGGAATCGCGCATGGTGGTAAGCTCG
CCCGGGTTGGTTACTGCGGGTGCTGCACTGGCACATATCGATCTGGCGCTTTGGCTCATACGCCAAAGCAGTCCCACGCT
CGCAGAAATGACAGCGCGTTATCTGCTGATAGAACCACGAGCGTCACAGGCAGTTTTTGCAATTCCTGATCACCTTGCAC
ATGCCGATCCACTGGTTCAGCAATTCGAACGCTGGGCTCGCCACAGGCTGGGTGAACGTTTCTCCCTGAGCGAAGCAGCC
AGTGCGACAGGCACAAGCGAGAGAACGCTTTCGCGGCGGCTAAAGGCTGTTCTGGGAAAATCCCCGCTTTCTTATTTTCA
GGATCTTCGTATTGAGCGCGCTGTATATCTCCTGGGGACGAGCAACGATAATGTAGACGCGATTGCTGCCCAGGTGGGTT
ATGCGGATGGTACAACCTTGCGCACCCTTCTTCGCCGCAGGGTCGGTCGAACGGTGAGCGAGCTTCGAGCCAGAACCCGG
GAGATTTCCAGTTCGTTCAACGACTCTCAAGCACAGGATATCGAGTGA

Upstream 100 bases:

>100_bases
TTGATTTCCTTTCTCGTGTTGAACAATAAGGCTCAGACTTTAAATATCGGGAGGATTTCTGCCAAGTGGCGATATTGACA
ATTTTGATATAATTTACGCC

Downstream 100 bases:

>100_bases
CAAAAAGTATCGCGAAAATAAGCTGCGCCACGTTCACAGACTGACTGCCTGCGCCCGTCATTTGTAGTTCATCCGGGCGT
ATTGAAAATTCCTGCTTCGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; ADPA Family Transcriptional Regulator; Transcriptional Activator FtrA; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC Family Regulatory Protein; AraC Family Regulatory Helix-Turn-Helix Protein; DJ-1/PfpI Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Protein; A-Factor-Responsive Transcriptional Activator; Transcriptional Regulator Arac Family; AraC Family Regulator; ThiJ/PfpI Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Transcriptional Regulator Protein AraC Family; Helix-Turn-Helix Domain-Containing Protein AraC Type; Arac Family Transcriptional Regulator; HTH-Type Transcriptional Regulator GlxA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MHIHILALDQVFDTGLSTLLDTLSIANDLAVSANAVTRFDLTIAGVRRNIRTSQGFSVPVVPAARCSPPDVVLIPALGAK
MPETLRLALERPDVCEAGDLLRQWSKEDVLIGAACTGTFVLADTLLLNDRSATTSWWLSPLFRERYPRVRLEESRMVVSS
PGLVTAGAALAHIDLALWLIRQSSPTLAEMTARYLLIEPRASQAVFAIPDHLAHADPLVQQFERWARHRLGERFSLSEAA
SATGTSERTLSRRLKAVLGKSPLSYFQDLRIERAVYLLGTSNDNVDAIAAQVGYADGTTLRTLLRRRVGRTVSELRARTR
EISSSFNDSQAQDIE

Sequences:

>Translated_335_residues
MHIHILALDQVFDTGLSTLLDTLSIANDLAVSANAVTRFDLTIAGVRRNIRTSQGFSVPVVPAARCSPPDVVLIPALGAK
MPETLRLALERPDVCEAGDLLRQWSKEDVLIGAACTGTFVLADTLLLNDRSATTSWWLSPLFRERYPRVRLEESRMVVSS
PGLVTAGAALAHIDLALWLIRQSSPTLAEMTARYLLIEPRASQAVFAIPDHLAHADPLVQQFERWARHRLGERFSLSEAA
SATGTSERTLSRRLKAVLGKSPLSYFQDLRIERAVYLLGTSNDNVDAIAAQVGYADGTTLRTLLRRRVGRTVSELRARTR
EISSSFNDSQAQDIE
>Mature_335_residues
MHIHILALDQVFDTGLSTLLDTLSIANDLAVSANAVTRFDLTIAGVRRNIRTSQGFSVPVVPAARCSPPDVVLIPALGAK
MPETLRLALERPDVCEAGDLLRQWSKEDVLIGAACTGTFVLADTLLLNDRSATTSWWLSPLFRERYPRVRLEESRMVVSS
PGLVTAGAALAHIDLALWLIRQSSPTLAEMTARYLLIEPRASQAVFAIPDHLAHADPLVQQFERWARHRLGERFSLSEAA
SATGTSERTLSRRLKAVLGKSPLSYFQDLRIERAVYLLGTSNDNVDAIAAQVGYADGTTLRTLLRRRVGRTVSELRARTR
EISSSFNDSQAQDIE

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36869; Mature: 36869

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIHILALDQVFDTGLSTLLDTLSIANDLAVSANAVTRFDLTIAGVRRNIRTSQGFSVPV
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHCCCCCCCCCCC
VPAARCSPPDVVLIPALGAKMPETLRLALERPDVCEAGDLLRQWSKEDVLIGAACTGTFV
CCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCHHH
LADTLLLNDRSATTSWWLSPLFRERYPRVRLEESRMVVSSPGLVTAGAALAHIDLALWLI
HHHHHEECCCCCCHHHHHHHHHHHCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHHHHH
RQSSPTLAEMTARYLLIEPRASQAVFAIPDHLAHADPLVQQFERWARHRLGERFSLSEAA
HCCCCCHHHHHHHEEEECCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
SATGTSERTLSRRLKAVLGKSPLSYFQDLRIERAVYLLGTSNDNVDAIAAQVGYADGTTL
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHCCCCCHHH
RTLLRRRVGRTVSELRARTREISSSFNDSQAQDIE
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MHIHILALDQVFDTGLSTLLDTLSIANDLAVSANAVTRFDLTIAGVRRNIRTSQGFSVPV
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHCCCCCCCCCCC
VPAARCSPPDVVLIPALGAKMPETLRLALERPDVCEAGDLLRQWSKEDVLIGAACTGTFV
CCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCHHH
LADTLLLNDRSATTSWWLSPLFRERYPRVRLEESRMVVSSPGLVTAGAALAHIDLALWLI
HHHHHEECCCCCCHHHHHHHHHHHCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHHHHH
RQSSPTLAEMTARYLLIEPRASQAVFAIPDHLAHADPLVQQFERWARHRLGERFSLSEAA
HCCCCCHHHHHHHEEEECCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
SATGTSERTLSRRLKAVLGKSPLSYFQDLRIERAVYLLGTSNDNVDAIAAQVGYADGTTL
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHCCCCCHHH
RTLLRRRVGRTVSELRARTREISSSFNDSQAQDIE
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA