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The map label for this gene is yqfA [H]

Identifier: 82701970

GI number: 82701970

Start: 953090

End: 953755

Strand: Direct

Name: yqfA [H]

Synonym: Nmul_A0839

Alternate gene names: 82701970

Gene position: 953090-953755 (Clockwise)

Preceding gene: 82701969

Following gene: 82701971

Centisome position: 29.93

GC content: 50.45

Gene sequence:

>666_bases
ATGCAAAACTTTAATTATGATCTGGCAAGGCCAGAGCGGAAACAATCACAAGCGGAAGAAATCGCAAACAGCATTAGCCA
TGGTATAGCCTTGGTTGCCGCACTCGTAGGAGCTCCATTTCTCATCACTCATGCCGCTCGCTCCGGCGACACCGGATTCC
TTGTAGGCACGAGTCTCTTCTCCGCGACTGTCATATTTCTTTACCTTGCTTCGACCATCTACCATGCGTTGCCGACAGGC
AAGGCCAAGCGCGTGTTTAAAGTTGTCGAGCATTCTGCCATCTTTGTTCTTATCGCGGGCACATATACGCCATTCACGCT
TGGAGTCCTGGATGGAGTATGGGGACGTGCCCTTCTCGTGGGAATTTGGGGTCTTGCGCTGGCGGGTATAATGCTCAAGG
TATTTTATAAAGCCTCTTTACCCATTCTATCAACCATCCTCTATCTGTTCATGGGGTGGCTTGTTGTGATTGCGGCTAAT
CCATTGGCGGCTAAAATGCCAATACAAGGGTTGCTCTGGTTGACTACAGGAGGCGTGTCTTACACACTCGGCGTAGTTTT
TTTTGCACTCGATTCTCGGCTGCGGTATGGCCATCTGGTTTGGCACCTCTTTGTGATAGCGGGCACAACATGCCATTACT
TCGCCGTGCTCTGGTATGCCGCCTAA

Upstream 100 bases:

>100_bases
GGTTTTACGGGCTGATCAGGATTGCAGCAGAGGTACTCGCACCACCTGAGGCAGCCGGGCTCATAAGCAGCTGGTATATT
AAAAAATCAGCCAGAATATC

Downstream 100 bases:

>100_bases
CGGGGCGGCCATGCGAAATAAAGTTTGACGTTCTTCAAATAGCGTGTATCCTGCAGTAGGTCTTTTGGATTCAAGCTGTA
AAACGATACCTCTGGTTGAC

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MQNFNYDLARPERKQSQAEEIANSISHGIALVAALVGAPFLITHAARSGDTGFLVGTSLFSATVIFLYLASTIYHALPTG
KAKRVFKVVEHSAIFVLIAGTYTPFTLGVLDGVWGRALLVGIWGLALAGIMLKVFYKASLPILSTILYLFMGWLVVIAAN
PLAAKMPIQGLLWLTTGGVSYTLGVVFFALDSRLRYGHLVWHLFVIAGTTCHYFAVLWYAA

Sequences:

>Translated_221_residues
MQNFNYDLARPERKQSQAEEIANSISHGIALVAALVGAPFLITHAARSGDTGFLVGTSLFSATVIFLYLASTIYHALPTG
KAKRVFKVVEHSAIFVLIAGTYTPFTLGVLDGVWGRALLVGIWGLALAGIMLKVFYKASLPILSTILYLFMGWLVVIAAN
PLAAKMPIQGLLWLTTGGVSYTLGVVFFALDSRLRYGHLVWHLFVIAGTTCHYFAVLWYAA
>Mature_221_residues
MQNFNYDLARPERKQSQAEEIANSISHGIALVAALVGAPFLITHAARSGDTGFLVGTSLFSATVIFLYLASTIYHALPTG
KAKRVFKVVEHSAIFVLIAGTYTPFTLGVLDGVWGRALLVGIWGLALAGIMLKVFYKASLPILSTILYLFMGWLVVIAAN
PLAAKMPIQGLLWLTTGGVSYTLGVVFFALDSRLRYGHLVWHLFVIAGTTCHYFAVLWYAA

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=222, Percent_Identity=27.027027027027, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI52630445, Length=216, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI154759277, Length=249, Percent_Identity=25.7028112449799, Blast_Score=72, Evalue=3e-13,
Organism=Escherichia coli, GI1789266, Length=213, Percent_Identity=43.6619718309859, Blast_Score=164, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI71996356, Length=210, Percent_Identity=31.9047619047619, Blast_Score=91, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24640324, Length=231, Percent_Identity=29.4372294372294, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24026; Mature: 24026

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNFNYDLARPERKQSQAEEIANSISHGIALVAALVGAPFLITHAARSGDTGFLVGTSLF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHHHH
SATVIFLYLASTIYHALPTGKAKRVFKVVEHSAIFVLIAGTYTPFTLGVLDGVWGRALLV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
GIWGLALAGIMLKVFYKASLPILSTILYLFMGWLVVIAANPLAAKMPIQGLLWLTTGGVS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEECCHH
YTLGVVFFALDSRLRYGHLVWHLFVIAGTTCHYFAVLWYAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MQNFNYDLARPERKQSQAEEIANSISHGIALVAALVGAPFLITHAARSGDTGFLVGTSLF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEHHHHHH
SATVIFLYLASTIYHALPTGKAKRVFKVVEHSAIFVLIAGTYTPFTLGVLDGVWGRALLV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
GIWGLALAGIMLKVFYKASLPILSTILYLFMGWLVVIAANPLAAKMPIQGLLWLTTGGVS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEECCHH
YTLGVVFFALDSRLRYGHLVWHLFVIAGTTCHYFAVLWYAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]