Click here to switch to the map view.

The map label for this gene is cbxSC [H]

Identifier: 82701818

GI number: 82701818

Start: 786731

End: 787165

Strand: Reverse

Name: cbxSC [H]

Synonym: Nmul_A0685

Alternate gene names: 82701818

Gene position: 787165-786731 (Counterclockwise)

Preceding gene: 82701819

Following gene: 82701817

Centisome position: 24.72

GC content: 51.95

Gene sequence:

>435_bases
ATGATGACCAATTTTCAAAACCGTCTCACGCAAGGGCAATTTTCTTTTCTGCCCCCGCTGACGGATAAGCAGATTTCGGC
GCAAATCAAATATGCGCTGAAGAACAACTGGGCTATCGGAATTGAATATACCGATGATCCGCATCCCCGCAACACGTATT
GGGAAATGTTCGGCAACCCGATGTTCGACCTGAAGGACCCCGCGGGTATCCTGCAGGAGATCAACGATTGCCGCAAGACC
TATCCGAACCACTACATTCGTGTTACGGCTTTCGATTCATCGCGCGGTGTGGAAAGCCCGGCGATGTCCTACATCGTCAA
CCGTCCGAAGAACGAGCCTGGTTTTGGCTTGGTGCGTCAGGAAGTGGATGGACGGCAAATTCGCTATACCGTCCATTCCT
ACGCAACGGAAAAACCGGAAGCAGAGCGGTACTGA

Upstream 100 bases:

>100_bases
CATGGAAGGACATCACCTTCAACTATGAATCCACCGACACCGCCGACTTTGTGCCGAGCGAAACAGCCAGCGTTTAATCG
TATCAAGGAGAAACCATATT

Downstream 100 bases:

>100_bases
TGGCTGCCTCCCCTTCCTTCCCGGGAGGGGAGAACCAATTTGGAAAGGCAGCAGGTGCTTTAACGGCCTGTTGTCTTACT
TGATCCTGATTTCTCTCATA

Product: ribulose-bisphosphate carboxylase

Products: NA

Alternate protein names: RuBisCO small subunit [H]

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MMTNFQNRLTQGQFSFLPPLTDKQISAQIKYALKNNWAIGIEYTDDPHPRNTYWEMFGNPMFDLKDPAGILQEINDCRKT
YPNHYIRVTAFDSSRGVESPAMSYIVNRPKNEPGFGLVRQEVDGRQIRYTVHSYATEKPEAERY

Sequences:

>Translated_144_residues
MMTNFQNRLTQGQFSFLPPLTDKQISAQIKYALKNNWAIGIEYTDDPHPRNTYWEMFGNPMFDLKDPAGILQEINDCRKT
YPNHYIRVTAFDSSRGVESPAMSYIVNRPKNEPGFGLVRQEVDGRQIRYTVHSYATEKPEAERY
>Mature_144_residues
MMTNFQNRLTQGQFSFLPPLTDKQISAQIKYALKNNWAIGIEYTDDPHPRNTYWEMFGNPMFDLKDPAGILQEINDCRKT
YPNHYIRVTAFDSSRGVESPAMSYIVNRPKNEPGFGLVRQEVDGRQIRYTVHSYATEKPEAERY

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG4451

COG function: function code C; Ribulose bisphosphate carboxylase small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO small chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000894 [H]

Pfam domain/function: PF00101 RuBisCO_small [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 16786; Mature: 16786

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTNFQNRLTQGQFSFLPPLTDKQISAQIKYALKNNWAIGIEYTDDPHPRNTYWEMFGNP
CCCCCHHHHCCCCEECCCCCCCCHHHHHEEEEECCCEEEEEEECCCCCCCCHHHHHHCCC
MFDLKDPAGILQEINDCRKTYPNHYIRVTAFDSSRGVESPAMSYIVNRPKNEPGFGLVRQ
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCEEEE
EVDGRQIRYTVHSYATEKPEAERY
CCCCCEEEEEEEHHCCCCCCCCCC
>Mature Secondary Structure
MMTNFQNRLTQGQFSFLPPLTDKQISAQIKYALKNNWAIGIEYTDDPHPRNTYWEMFGNP
CCCCCHHHHCCCCEECCCCCCCCHHHHHEEEEECCCEEEEEEECCCCCCCCHHHHHHCCC
MFDLKDPAGILQEINDCRKTYPNHYIRVTAFDSSRGVESPAMSYIVNRPKNEPGFGLVRQ
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCEEEE
EVDGRQIRYTVHSYATEKPEAERY
CCCCCEEEEEEEHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2820933; 10329167 [H]