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The map label for this gene is ihfA

Identifier: 82701627

GI number: 82701627

Start: 553136

End: 553441

Strand: Direct

Name: ihfA

Synonym: Nmul_A0493

Alternate gene names: 82701627

Gene position: 553136-553441 (Clockwise)

Preceding gene: 82701626

Following gene: 82701628

Centisome position: 17.37

GC content: 50.0

Gene sequence:

>306_bases
ATGACCTTAACAAAGGCCGAGCTGGCGGATTTGCTCTTTGAAAAAGTCGGTTTCAACAAACGCGAAGCCAAGGACATGGT
GGAGTCTTTTTACGAAGAGGTTCGCATTGCGCTGCAAAATGGCGACGGCGTCAAGCTATCGGGATTCGGTAATTTCCAGT
TACGCGACAAGCCCCAGCGTCCCGGCCGGAATCCCAAAACAGGTGAAGAAATTCCTATCACTGCCCGCAGGGTAGTTACT
TTCCATGCAAGCCAGAAACTGAAGGCGATGGTTGAAAAGAATCAGCATGGCAAAGATAACGCCTGA

Upstream 100 bases:

>100_bases
AACTGATAAGTGTTCTTGAAAACAGGTTTGGAGCAAGACTGCGCAGTTGACCGGAAGATAGAGCACGATGTTTGAGAGTA
ATAAAAGTGAGAGGGGGACT

Downstream 100 bases:

>100_bases
TACTCCGCTTACCCCTATTCCCGCCAAACGCTATTTCACGATTGGAGAAGTAAGCGAACTATGCGGTGTGAAGCCGCATG
TATTGCGTTACTGGGAACAG

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MTLTKAELADLLFEKVGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVT
FHASQKLKAMVEKNQHGKDNA

Sequences:

>Translated_101_residues
MTLTKAELADLLFEKVGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVT
FHASQKLKAMVEKNQHGKDNA
>Mature_100_residues
TLTKAELADLLFEKVGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTF
HASQKLKAMVEKNQHGKDNA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=99, Percent_Identity=68.6868686868687, Blast_Score=138, Evalue=9e-35,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=38.8888888888889, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=35.9550561797753, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_NITMU (Q2YBS0)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_411193.1
- HSSP:   P0A6X7
- ProteinModelPortal:   Q2YBS0
- SMR:   Q2YBS0
- STRING:   Q2YBS0
- GeneID:   3784855
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A0493
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- PhylomeDB:   Q2YBS0
- ProtClustDB:   PRK00285
- BioCyc:   NMUL323848:NMUL_A0493-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11417; Mature: 11286

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTKAELADLLFEKVGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQR
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCCC
PGRNPKTGEEIPITARRVVTFHASQKLKAMVEKNQHGKDNA
CCCCCCCCCCCCCCHHHEEEECHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TLTKAELADLLFEKVGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQR
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCCC
PGRNPKTGEEIPITARRVVTFHASQKLKAMVEKNQHGKDNA
CCCCCCCCCCCCCCHHHEEEECHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA