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The map label for this gene is rbn [C]

Identifier: 82701586

GI number: 82701586

Start: 501630

End: 502910

Strand: Reverse

Name: rbn [C]

Synonym: Nmul_A0452

Alternate gene names: 82701586

Gene position: 502910-501630 (Counterclockwise)

Preceding gene: 82701587

Following gene: 82701585

Centisome position: 15.79

GC content: 54.02

Gene sequence:

>1281_bases
GTGGAGCTTTTCTCTCAATCCTCACGACCTGTCGCGAAAGTAATGAAATCCATACGTCCCGTCGATTTCATGCACTATGT
CCTTGTGCGCTTTTTCCAGCACAACTGCACCCAGATTGCAGGGAGTCTTACATTCACCACCTTGCTTTCGTTGGTACCAA
TGCTCGCGATCGGGTTATCGGTAATAGCGGCATTTCCCGCATTCGCTGAATTCTCGGACCGGATAAAGGAATTCATTCTC
ACCACCATGGTGCCGGAAGCAGCAAACAAGGTCATCTCCGTATACATGCAGCAATTCGCCGACAATGCGGCCAAGCTGAC
TGCCATAGGCATCGCCTTCCTGGGCGTAACCGCACTTGCGCTCATGCTTACAATAGACGAAGCACTCAACAGCATCTGGC
GAGTATCCCGCCTGCGGCCGCTCCTGCATCGCCTCCTGATATATTGGTCCGTTCTGACGATTGGCCCTTTATTGATCGGC
GCGAGCCTGTCGCTTACGTCCTGGCTCATGACCGCTTCCAGGGGATTTACTCGTGATATCCCGGGGGGGGACATCATGCT
TTTGCGGTTGAGTCCGCTCGTGCTGACGAGTATTGCCTTTTCGGCTTCCTATCTCATCGTGCCGAATCGTCAGGTGGCAT
GGCGGCATGCGATAGCGGGTGGCGTGGCGGCGGCGATAGGGTTCGAGATAATGAAGGAAGGCTTTGCGTTCTACATCACC
CGGTTTCCGACTTATCAGGCAGTATACGGCACCTTTGCGACCATTCCCATTTTCCTGCTATGGCTTTATCTTTCATGGTT
GATGGTGCTGCTCGGAGCGGTTATTGCCGCATCGCTTTCAAGCTGGCGTTTCCGGGAGTGGCGTGACGACCCGAACGCCA
GGGGTAAGCAGTTTTTTGATGCATTGCGTTTATTGGGGATACTTGGAGAGGCGTTGAAGGCAGGCAAAGTTGAAACCGCT
CTCAGCTTGCAGCAGCAGTTGATGCTAAGTCCCGAAGAAGTGGAGCGGATACTGGAGCTCATGGTGAAAGCCAATTTCGT
GCGACAGGTTCAGGAAGGAGGATGGGTTCAAATACTGGATCCCGCCGAGATCCGCATTGCGGATGTCTACCGCCTGTTTG
CGTTTCGTCCCGAAGCACTAAGGGGTACGGCAGGGGGGGATACCCGGCTGGAGCAGCTGCTCGATGATATTGCTGTGGGG
ATCGATGAGAAAATGAGCCTTCCGCTGTCGCAACTTTTTACTTCCGCGGAACCGGAACCACCCGCAGAAATGTCAGCTTA
G

Upstream 100 bases:

>100_bases
ACAGCAAGCTGGAGCGGGCACACCCGCAAGTGTAGAAATCTTGAAGAACGCGGCAGGACAAACCGGGGCTGTCTGTCCTG
CCTCCAAAGCGGGGCTACGC

Downstream 100 bases:

>100_bases
CAAAGATTGGGGGAGTTGTTGGAGAAATGAAACGACGTCAGATGAAACGATGCCATTTGAGTATTCTGCTTTATCGGTTC
TGTTTATGGATCATGCTTTC

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MELFSQSSRPVAKVMKSIRPVDFMHYVLVRFFQHNCTQIAGSLTFTTLLSLVPMLAIGLSVIAAFPAFAEFSDRIKEFIL
TTMVPEAANKVISVYMQQFADNAAKLTAIGIAFLGVTALALMLTIDEALNSIWRVSRLRPLLHRLLIYWSVLTIGPLLIG
ASLSLTSWLMTASRGFTRDIPGGDIMLLRLSPLVLTSIAFSASYLIVPNRQVAWRHAIAGGVAAAIGFEIMKEGFAFYIT
RFPTYQAVYGTFATIPIFLLWLYLSWLMVLLGAVIAASLSSWRFREWRDDPNARGKQFFDALRLLGILGEALKAGKVETA
LSLQQQLMLSPEEVERILELMVKANFVRQVQEGGWVQILDPAEIRIADVYRLFAFRPEALRGTAGGDTRLEQLLDDIAVG
IDEKMSLPLSQLFTSAEPEPPAEMSA

Sequences:

>Translated_426_residues
MELFSQSSRPVAKVMKSIRPVDFMHYVLVRFFQHNCTQIAGSLTFTTLLSLVPMLAIGLSVIAAFPAFAEFSDRIKEFIL
TTMVPEAANKVISVYMQQFADNAAKLTAIGIAFLGVTALALMLTIDEALNSIWRVSRLRPLLHRLLIYWSVLTIGPLLIG
ASLSLTSWLMTASRGFTRDIPGGDIMLLRLSPLVLTSIAFSASYLIVPNRQVAWRHAIAGGVAAAIGFEIMKEGFAFYIT
RFPTYQAVYGTFATIPIFLLWLYLSWLMVLLGAVIAASLSSWRFREWRDDPNARGKQFFDALRLLGILGEALKAGKVETA
LSLQQQLMLSPEEVERILELMVKANFVRQVQEGGWVQILDPAEIRIADVYRLFAFRPEALRGTAGGDTRLEQLLDDIAVG
IDEKMSLPLSQLFTSAEPEPPAEMSA
>Mature_426_residues
MELFSQSSRPVAKVMKSIRPVDFMHYVLVRFFQHNCTQIAGSLTFTTLLSLVPMLAIGLSVIAAFPAFAEFSDRIKEFIL
TTMVPEAANKVISVYMQQFADNAAKLTAIGIAFLGVTALALMLTIDEALNSIWRVSRLRPLLHRLLIYWSVLTIGPLLIG
ASLSLTSWLMTASRGFTRDIPGGDIMLLRLSPLVLTSIAFSASYLIVPNRQVAWRHAIAGGVAAAIGFEIMKEGFAFYIT
RFPTYQAVYGTFATIPIFLLWLYLSWLMVLLGAVIAASLSSWRFREWRDDPNARGKQFFDALRLLGILGEALKAGKVETA
LSLQQQLMLSPEEVERILELMVKANFVRQVQEGGWVQILDPAEIRIADVYRLFAFRPEALRGTAGGDTRLEQLLDDIAVG
IDEKMSLPLSQLFTSAEPEPPAEMSA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=254, Percent_Identity=45.2755905511811, Blast_Score=213, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y452_NITMU (Q2YBW1)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_411152.1
- ProteinModelPortal:   Q2YBW1
- STRING:   Q2YBW1
- GeneID:   3785999
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A0452
- HOGENOM:   HBG451793
- OMA:   IVKYERW
- PhylomeDB:   Q2YBW1
- ProtClustDB:   CLSK2772800
- BioCyc:   NMUL323848:NMUL_A0452-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47299; Mature: 47299

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11df1f28)-; HASH(0x1169a3ac)-; HASH(0x11621294)-; HASH(0x11f06ba0)-; HASH(0x11f5e0f0)-; HASH(0x108db9f0)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFSQSSRPVAKVMKSIRPVDFMHYVLVRFFQHNCTQIAGSLTFTTLLSLVPMLAIGLS
CCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAAFPAFAEFSDRIKEFILTTMVPEAANKVISVYMQQFADNAAKLTAIGIAFLGVTALA
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LMLTIDEALNSIWRVSRLRPLLHRLLIYWSVLTIGPLLIGASLSLTSWLMTASRGFTRDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
PGGDIMLLRLSPLVLTSIAFSASYLIVPNRQVAWRHAIAGGVAAAIGFEIMKEGFAFYIT
CCCCEEEEEHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEHH
RFPTYQAVYGTFATIPIFLLWLYLSWLMVLLGAVIAASLSSWRFREWRDDPNARGKQFFD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ALRLLGILGEALKAGKVETALSLQQQLMLSPEEVERILELMVKANFVRQVQEGGWVQILD
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PAEIRIADVYRLFAFRPEALRGTAGGDTRLEQLLDDIAVGIDEKMSLPLSQLFTSAEPEP
CCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHCCCCCCC
PAEMSA
CCCCCH
>Mature Secondary Structure
MELFSQSSRPVAKVMKSIRPVDFMHYVLVRFFQHNCTQIAGSLTFTTLLSLVPMLAIGLS
CCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAAFPAFAEFSDRIKEFILTTMVPEAANKVISVYMQQFADNAAKLTAIGIAFLGVTALA
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LMLTIDEALNSIWRVSRLRPLLHRLLIYWSVLTIGPLLIGASLSLTSWLMTASRGFTRDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
PGGDIMLLRLSPLVLTSIAFSASYLIVPNRQVAWRHAIAGGVAAAIGFEIMKEGFAFYIT
CCCCEEEEEHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEHH
RFPTYQAVYGTFATIPIFLLWLYLSWLMVLLGAVIAASLSSWRFREWRDDPNARGKQFFD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ALRLLGILGEALKAGKVETALSLQQQLMLSPEEVERILELMVKANFVRQVQEGGWVQILD
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
PAEIRIADVYRLFAFRPEALRGTAGGDTRLEQLLDDIAVGIDEKMSLPLSQLFTSAEPEP
CCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHCCCCCCC
PAEMSA
CCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA