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The map label for this gene is rarA [H]

Identifier: 82701313

GI number: 82701313

Start: 189561

End: 190874

Strand: Direct

Name: rarA [H]

Synonym: Nmul_A0179

Alternate gene names: 82701313

Gene position: 189561-190874 (Clockwise)

Preceding gene: 82701312

Following gene: 82701314

Centisome position: 5.95

GC content: 57.15

Gene sequence:

>1314_bases
GTGAGTGATCTGTTCGCGCAGGCCCAACCTGCTGCACCCCTGGCGGAACAGTTGCGTCCGCATGAATTGAAGGATGTGGT
GGGGCAGCCTCATTTGTTGGGTCCCGGCAAACCGTTGCGTCTTGCATTCGAGTCCGGCAAGCCGCATTCAATGATACTGT
GGGGTCCGCCCGGCTCAGGCAAGACCACGCTGGCTCGCCTCATGGCGTCGGCGTTTGACGCTGAATTCATTGCGCTGTCT
GCCGTGCTAGCGGGGGTCAAGGATATTCGTGACGCAATCGAACGGGCACGTGCAGTTTTGCACCAGTCCAGCCGCCATAC
CATCCTGTTCGTGGATGAGGTTCATCGCTTCAACAAGTCGCAACAGGATGCGTTTCTGCCCTTCGTCGAACAAGGATTGG
TAACATTTATCGGTGCCACGACCGAGAACCCTTCATTCGAGGTGAACGGCGCCCTGTTATCGCGTGCCCAGGTGTATGTG
CTCACTGCCTTGTCCACGACCGAACTGGGTACCCTGTTCGACCGGGCAAGGAAGCTGGCATTGGCTGAGCTGGATTTCAC
CCCTGATGCGCGATCATTGTTGATCGAATATGCCGACGGTGATGCGCGGCGTTTGCTCAATCTTCTGGAACAGCTAAAAA
CTGCGGCGGCGGCTGAAGGAATATCAAGAATAGATGCGGATTACGCCCGTGAGAGGCTATCTCGCGCCGCGCGCCGGTTT
GATAAGGGCGGCGATGAATTTTACGACCAGATTTCGGCGCTGCATAAATCCCTGCGAGGCTCTCATCCGCACGCCACGCT
TTACTGGATGTGCCGGATGCTGGATGCCGGCGCAGATCCGCGCTATATTGCCCGGCGCCTCATCCGTGCCTCCGTGGAAG
ATATCGGCCTGGCCGACCCGCGCGCCCTGCGTATTGCGCTGGATGCTTCGGAGACTTACGAACGCCTGGGTAGTCCCGAG
GGGGAACTGGCCCTGGCGCAGGCGGCCCTGTATCTTGCCTGCGCTCCCAAGAGCAATGCTGCTTACCTTGCGTATAATAA
AACCCGCTCTTTTATCGGTGAAGACAAGTCGCGAAGGGTTCCGGAACACTTGCGCAACGCGCCCACGCGCCTGATGAAGG
AGATGGGATTCGGGCGCGACTACCGCTATGCGCACGATGATCCCGATGCATATGCCGCGGGAGAACATTATTTTCCGGAA
GGAATGCCGGAAATTGAATTTTACCGGCCAACCAGCCGCGGATTCGAAAGTAAAATATCCGAAAGACTGGCGTATCTGCG
CGAGCTGGACAAACAGGCAAAAAAAGAATCATAA

Upstream 100 bases:

>100_bases
GGCCAGGTTACCGTATTCGAATTTTCGGGTGTGGAACAAAACCGCAAGCTTCCTCCGGAATTGTTCAAATTCAGTCCCCC
GGCGGGTGTGGACGTGATCA

Downstream 100 bases:

>100_bases
GATAGAACCTGCGTCGATTTGGAGTCGAGATGTTAGATATTCATCTGTTACGTACGCAACTGGATCACGTTGCCAGGCTT
CTTGCCGAGCGTAACTACGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MSDLFAQAQPAAPLAEQLRPHELKDVVGQPHLLGPGKPLRLAFESGKPHSMILWGPPGSGKTTLARLMASAFDAEFIALS
AVLAGVKDIRDAIERARAVLHQSSRHTILFVDEVHRFNKSQQDAFLPFVEQGLVTFIGATTENPSFEVNGALLSRAQVYV
LTALSTTELGTLFDRARKLALAELDFTPDARSLLIEYADGDARRLLNLLEQLKTAAAAEGISRIDADYARERLSRAARRF
DKGGDEFYDQISALHKSLRGSHPHATLYWMCRMLDAGADPRYIARRLIRASVEDIGLADPRALRIALDASETYERLGSPE
GELALAQAALYLACAPKSNAAYLAYNKTRSFIGEDKSRRVPEHLRNAPTRLMKEMGFGRDYRYAHDDPDAYAAGEHYFPE
GMPEIEFYRPTSRGFESKISERLAYLRELDKQAKKES

Sequences:

>Translated_437_residues
MSDLFAQAQPAAPLAEQLRPHELKDVVGQPHLLGPGKPLRLAFESGKPHSMILWGPPGSGKTTLARLMASAFDAEFIALS
AVLAGVKDIRDAIERARAVLHQSSRHTILFVDEVHRFNKSQQDAFLPFVEQGLVTFIGATTENPSFEVNGALLSRAQVYV
LTALSTTELGTLFDRARKLALAELDFTPDARSLLIEYADGDARRLLNLLEQLKTAAAAEGISRIDADYARERLSRAARRF
DKGGDEFYDQISALHKSLRGSHPHATLYWMCRMLDAGADPRYIARRLIRASVEDIGLADPRALRIALDASETYERLGSPE
GELALAQAALYLACAPKSNAAYLAYNKTRSFIGEDKSRRVPEHLRNAPTRLMKEMGFGRDYRYAHDDPDAYAAGEHYFPE
GMPEIEFYRPTSRGFESKISERLAYLRELDKQAKKES
>Mature_436_residues
SDLFAQAQPAAPLAEQLRPHELKDVVGQPHLLGPGKPLRLAFESGKPHSMILWGPPGSGKTTLARLMASAFDAEFIALSA
VLAGVKDIRDAIERARAVLHQSSRHTILFVDEVHRFNKSQQDAFLPFVEQGLVTFIGATTENPSFEVNGALLSRAQVYVL
TALSTTELGTLFDRARKLALAELDFTPDARSLLIEYADGDARRLLNLLEQLKTAAAAEGISRIDADYARERLSRAARRFD
KGGDEFYDQISALHKSLRGSHPHATLYWMCRMLDAGADPRYIARRLIRASVEDIGLADPRALRIALDASETYERLGSPEG
ELALAQAALYLACAPKSNAAYLAYNKTRSFIGEDKSRRVPEHLRNAPTRLMKEMGFGRDYRYAHDDPDAYAAGEHYFPEG
MPEIEFYRPTSRGFESKISERLAYLRELDKQAKKES

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=42.9545454545455, Blast_Score=314, Evalue=9e-86,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=38.8636363636364, Blast_Score=261, Evalue=1e-69,
Organism=Escherichia coli, GI1787119, Length=428, Percent_Identity=52.5700934579439, Blast_Score=438, Evalue=1e-124,
Organism=Saccharomyces cerevisiae, GI6324111, Length=428, Percent_Identity=40.6542056074766, Blast_Score=298, Evalue=1e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48649; Mature: 48518

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFAQAQPAAPLAEQLRPHELKDVVGQPHLLGPGKPLRLAFESGKPHSMILWGPPGSG
CCCCCCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCC
KTTLARLMASAFDAEFIALSAVLAGVKDIRDAIERARAVLHQSSRHTILFVDEVHRFNKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCC
QQDAFLPFVEQGLVTFIGATTENPSFEVNGALLSRAQVYVLTALSTTELGTLFDRARKLA
CCHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHCCEEEEEEECCHHHHHHHHHHHHHHH
LAELDFTPDARSLLIEYADGDARRLLNLLEQLKTAAAAEGISRIDADYARERLSRAARRF
HHHCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKGGDEFYDQISALHKSLRGSHPHATLYWMCRMLDAGADPRYIARRLIRASVEDIGLADP
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
RALRIALDASETYERLGSPEGELALAQAALYLACAPKSNAAYLAYNKTRSFIGEDKSRRV
CEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCEEEEECCHHHHHCCCHHCCC
PEHLRNAPTRLMKEMGFGRDYRYAHDDPDAYAAGEHYFPEGMPEIEFYRPTSRGFESKIS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHH
ERLAYLRELDKQAKKES
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDLFAQAQPAAPLAEQLRPHELKDVVGQPHLLGPGKPLRLAFESGKPHSMILWGPPGSG
CCCCCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCC
KTTLARLMASAFDAEFIALSAVLAGVKDIRDAIERARAVLHQSSRHTILFVDEVHRFNKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCC
QQDAFLPFVEQGLVTFIGATTENPSFEVNGALLSRAQVYVLTALSTTELGTLFDRARKLA
CCHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHCCEEEEEEECCHHHHHHHHHHHHHHH
LAELDFTPDARSLLIEYADGDARRLLNLLEQLKTAAAAEGISRIDADYARERLSRAARRF
HHHCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKGGDEFYDQISALHKSLRGSHPHATLYWMCRMLDAGADPRYIARRLIRASVEDIGLADP
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
RALRIALDASETYERLGSPEGELALAQAALYLACAPKSNAAYLAYNKTRSFIGEDKSRRV
CEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCEEEEECCHHHHHCCCHHCCC
PEHLRNAPTRLMKEMGFGRDYRYAHDDPDAYAAGEHYFPEGMPEIEFYRPTSRGFESKIS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHH
ERLAYLRELDKQAKKES
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]