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The map label for this gene is rubB [H]

Identifier: 82701305

GI number: 82701305

Start: 178346

End: 179500

Strand: Reverse

Name: rubB [H]

Synonym: Nmul_A0171

Alternate gene names: 82701305

Gene position: 179500-178346 (Counterclockwise)

Preceding gene: 82701311

Following gene: 82701303

Centisome position: 5.64

GC content: 57.66

Gene sequence:

>1155_bases
ATGAGCACACCACCAATCGTCATTATTGGCAGCGGCATTGGCGGCTACACGGTCGCCCGGGAATTCCGCAAGCTGGATAC
TACAACGCCCGTTCTGATCATTTCCGCAGATCACGGCGGCTTCTATTCCAAGCCGATGCTTTCGAATGCCCTGGCGACAG
GCAAAACACCTGCCTCCATAGTCACCGCAAGCGCCGAGAAAATGGCCGAGCAGCTTAAGCTGACAATCCGCCCTTATAGC
CGCGTAAGTGCTATTGATCCATCCAGCAAAACAATAACTCTACAGGATGGAGAGAAAGTTTCCTACAGCAAACTCGTTCT
GGCCATGGGGGCCGATCCCATCCGCTTGCCGCTGGAAGGAGAGGGTGCGAAGGACATTCTTTCGGTCAACGATCTGGAGG
ATTACCAACGGCTACGCGACGCCCTGGGAGGAAAAAAGGATGTCACCATCCTTGGGGCCGGTCTGATCGGCTGTGAATTT
GCAAATGATCTGGCGACAGCAGGTTATCGGGTAAGGGTAATCGATATCAGTGTCCATCCCCTGGGTCGGCTTCTGCCGCA
GGCTGGAGGCGCTTTCATGCAACACAGGCTCGAAGCCGCGGGTGTCGTTTTTCACCTGGGCGCCACCGCCGAATACGTGG
AACGGATCCATGAAAGTTTTCGCCTGACTCTTGCCAGCGGAGAAACGCTGCAGACCGAGATCGTGCTCTCCGCCGTCGGG
CTGCGTCCCCGCATCCATCTCGCGCAGGCTGCAGGGTTGGGGGTGAACCGCGGAATAGTGGTAAATCGCTCCTTGCAGAC
GCACAATGAGCATATTTACGCGTTAGGCGATTGTGCAGAGGTGGAAGGCAGAGTTTTACCCTTCGTCATGCCGATCATGC
ATGCCGCCCGCGGGCTGGCACCGACTCTCGCTGAAACTCCCACTCCGATACGTTACCCGGCGATGCCTGTCCTGGTTAAA
ACACCAGCCTGCCCGGCCGTGGTATCGCCACCCGCAGCCGGCGCCCAGGGCGAATGGCTAGTGGAGGAAGATGAAAGCGG
CGTGAAGGCCCTGTACAAAACCGCCGAGGGAAAACTGCTCGGCTATGCCCTGCTGGGAGCGTCAACCAAGGAAAAGAATG
CTCTGGCTGCCGAGTTGCCGGCGGTAATGGAGTAG

Upstream 100 bases:

>100_bases
CTCACACGGAAGCATTGAACGCAGCGCGAATCGAAACCGGAGCAGCCTCAGCAACACATCGCAGTACGAGCAGCAACGTC
AACAGGGCAAAAACTCAAGC

Downstream 100 bases:

>100_bases
GCGGTGATCATACTTTAGGCTGAATCTCGGGGGCAGGCACCTCCCCTCTCTGCATCACTAGCTCTGGCTCTGGCCTTGGC
TCTGGCTCTGATACACCCGA

Product: FAD-dependent pyridine nucleotide-disulfide oxidoreductase

Products: NA

Alternate protein names: RdxR [H]

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MSTPPIVIIGSGIGGYTVAREFRKLDTTTPVLIISADHGGFYSKPMLSNALATGKTPASIVTASAEKMAEQLKLTIRPYS
RVSAIDPSSKTITLQDGEKVSYSKLVLAMGADPIRLPLEGEGAKDILSVNDLEDYQRLRDALGGKKDVTILGAGLIGCEF
ANDLATAGYRVRVIDISVHPLGRLLPQAGGAFMQHRLEAAGVVFHLGATAEYVERIHESFRLTLASGETLQTEIVLSAVG
LRPRIHLAQAAGLGVNRGIVVNRSLQTHNEHIYALGDCAEVEGRVLPFVMPIMHAARGLAPTLAETPTPIRYPAMPVLVK
TPACPAVVSPPAAGAQGEWLVEEDESGVKALYKTAEGKLLGYALLGASTKEKNALAAELPAVME

Sequences:

>Translated_384_residues
MSTPPIVIIGSGIGGYTVAREFRKLDTTTPVLIISADHGGFYSKPMLSNALATGKTPASIVTASAEKMAEQLKLTIRPYS
RVSAIDPSSKTITLQDGEKVSYSKLVLAMGADPIRLPLEGEGAKDILSVNDLEDYQRLRDALGGKKDVTILGAGLIGCEF
ANDLATAGYRVRVIDISVHPLGRLLPQAGGAFMQHRLEAAGVVFHLGATAEYVERIHESFRLTLASGETLQTEIVLSAVG
LRPRIHLAQAAGLGVNRGIVVNRSLQTHNEHIYALGDCAEVEGRVLPFVMPIMHAARGLAPTLAETPTPIRYPAMPVLVK
TPACPAVVSPPAAGAQGEWLVEEDESGVKALYKTAEGKLLGYALLGASTKEKNALAAELPAVME
>Mature_383_residues
STPPIVIIGSGIGGYTVAREFRKLDTTTPVLIISADHGGFYSKPMLSNALATGKTPASIVTASAEKMAEQLKLTIRPYSR
VSAIDPSSKTITLQDGEKVSYSKLVLAMGADPIRLPLEGEGAKDILSVNDLEDYQRLRDALGGKKDVTILGAGLIGCEFA
NDLATAGYRVRVIDISVHPLGRLLPQAGGAFMQHRLEAAGVVFHLGATAEYVERIHESFRLTLASGETLQTEIVLSAVGL
RPRIHLAQAAGLGVNRGIVVNRSLQTHNEHIYALGDCAEVEGRVLPFVMPIMHAARGLAPTLAETPTPIRYPAMPVLVKT
PACPAVVSPPAAGAQGEWLVEEDESGVKALYKTAEGKLLGYALLGASTKEKNALAAELPAVME

Specific function: Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI226437568, Length=287, Percent_Identity=25.4355400696864, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI65787454, Length=287, Percent_Identity=25.4355400696864, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI21389617, Length=287, Percent_Identity=25.4355400696864, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI22202629, Length=309, Percent_Identity=24.2718446601942, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI4757732, Length=309, Percent_Identity=24.2718446601942, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1789065, Length=375, Percent_Identity=34.9333333333333, Blast_Score=217, Evalue=8e-58,
Organism=Escherichia coli, GI1788892, Length=279, Percent_Identity=27.9569892473118, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1789765, Length=297, Percent_Identity=28.2828282828283, Blast_Score=89, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17559934, Length=277, Percent_Identity=27.4368231046931, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI32564386, Length=315, Percent_Identity=24.4444444444444, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28573993, Length=310, Percent_Identity=27.0967741935484, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24581020, Length=310, Percent_Identity=27.0967741935484, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.18.1.1 [H]

Molecular weight: Translated: 40672; Mature: 40540

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPPIVIIGSGIGGYTVAREFRKLDTTTPVLIISADHGGFYSKPMLSNALATGKTPASI
CCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCHHH
VTASAEKMAEQLKLTIRPYSRVSAIDPSSKTITLQDGEKVSYSKLVLAMGADPIRLPLEG
EEHHHHHHHHHHEEEECCCHHEEECCCCCCEEEEECCCCCCHHEEEEEECCCCEEEEECC
EGAKDILSVNDLEDYQRLRDALGGKKDVTILGAGLIGCEFANDLATAGYRVRVIDISVHP
CCCHHHEECCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCEEEEEEEEECCC
LGRLLPQAGGAFMQHRLEAAGVVFHLGATAEYVERIHESFRLTLASGETLQTEIVLSAVG
HHHHHHHCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHEEEEECCCCEEHHHEEHHHC
LRPRIHLAQAAGLGVNRGIVVNRSLQTHNEHIYALGDCAEVEGRVLPFVMPIMHAARGLA
CCCCEEEEHHCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
PTLAETPTPIRYPAMPVLVKTPACPAVVSPPAAGAQGEWLVEEDESGVKALYKTAEGKLL
CHHHCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHCCCCEE
GYALLGASTKEKNALAAELPAVME
EEEEECCCCCCCCCHHHHCHHHCC
>Mature Secondary Structure 
STPPIVIIGSGIGGYTVAREFRKLDTTTPVLIISADHGGFYSKPMLSNALATGKTPASI
CCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCHHH
VTASAEKMAEQLKLTIRPYSRVSAIDPSSKTITLQDGEKVSYSKLVLAMGADPIRLPLEG
EEHHHHHHHHHHEEEECCCHHEEECCCCCCEEEEECCCCCCHHEEEEEECCCCEEEEECC
EGAKDILSVNDLEDYQRLRDALGGKKDVTILGAGLIGCEFANDLATAGYRVRVIDISVHP
CCCHHHEECCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCEEEEEEEEECCC
LGRLLPQAGGAFMQHRLEAAGVVFHLGATAEYVERIHESFRLTLASGETLQTEIVLSAVG
HHHHHHHCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHEEEEECCCCEEHHHEEHHHC
LRPRIHLAQAAGLGVNRGIVVNRSLQTHNEHIYALGDCAEVEGRVLPFVMPIMHAARGLA
CCCCEEEEHHCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
PTLAETPTPIRYPAMPVLVKTPACPAVVSPPAAGAQGEWLVEEDESGVKALYKTAEGKLL
CHHHCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHCCCCEE
GYALLGASTKEKNALAAELPAVME
EEEEECCCCCCCCCHHHHCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA