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The map label for this gene is intB [H]

Identifier: 82701271

GI number: 82701271

Start: 142339

End: 142740

Strand: Direct

Name: intB [H]

Synonym: Nmul_A0136

Alternate gene names: 82701271

Gene position: 142339-142740 (Clockwise)

Preceding gene: 82701270

Following gene: 82701272

Centisome position: 4.47

GC content: 46.27

Gene sequence:

>402_bases
ATGAAATTAAACGATGTGGCAGTGCGCAAGGCCAAACCCGAGTCCAAGTCTTACAAAATGGCTGATGGTGGAGGCATGTA
TCTTGAAGTGATGCCGAACGGTTCAAAATATTGGTGGTTGAAATATCGGTTCGGTGGAAAGGAAAAACGTCTTGCGTGCG
GAGTTTATCCGGACGTGCCACTAAGCCTTGTACGCAGCTGGCGAGATGATGCCTGCAAGCTACTGGCACAAGGAATTGAC
CCTGGGGCGAATTGCAAATCACAGAAGACAGTAAAACAGGGACAGGAAGCAAATAGCTTTGAAGTAATAGCGCGAAGGAG
ATCAAAACCCTGGTGGCCAGCCCTAGGGTTTCTCTTCACCAGAGACTATATAATCGATTTACATATGTTAAGTATTTCAT
AG

Upstream 100 bases:

>100_bases
CCTATCCCCTGCGTTCTATTGAAGCCAGCAGCTAAAGGGGGGCATAATTTGCCAATATGTGCCCCCAATGCAGATTTGAT
GCCCACAATAAGGGGTTTTC

Downstream 100 bases:

>100_bases
TAAGCCTTTCCTTATATTGTTAATCTACCTACTCGCTTCTCTCCCCAAGTAGAAAAGCGATTGCAGTACCCCCGCCCGGC
TTATGCCGGGCTTTTCTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MKLNDVAVRKAKPESKSYKMADGGGMYLEVMPNGSKYWWLKYRFGGKEKRLACGVYPDVPLSLVRSWRDDACKLLAQGID
PGANCKSQKTVKQGQEANSFEVIARRRSKPWWPALGFLFTRDYIIDLHMLSIS

Sequences:

>Translated_133_residues
MKLNDVAVRKAKPESKSYKMADGGGMYLEVMPNGSKYWWLKYRFGGKEKRLACGVYPDVPLSLVRSWRDDACKLLAQGID
PGANCKSQKTVKQGQEANSFEVIARRRSKPWWPALGFLFTRDYIIDLHMLSIS
>Mature_133_residues
MKLNDVAVRKAKPESKSYKMADGGGMYLEVMPNGSKYWWLKYRFGGKEKRLACGVYPDVPLSLVRSWRDDACKLLAQGID
PGANCKSQKTVKQGQEANSFEVIARRRSKPWWPALGFLFTRDYIIDLHMLSIS

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=127, Percent_Identity=33.0708661417323, Blast_Score=73, Evalue=8e-15,
Organism=Escherichia coli, GI145693166, Length=100, Percent_Identity=35, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI1788690, Length=96, Percent_Identity=39.5833333333333, Blast_Score=63, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 15163; Mature: 15163

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNDVAVRKAKPESKSYKMADGGGMYLEVMPNGSKYWWLKYRFGGKEKRLACGVYPDVP
CCCCCCEEECCCCCCCCEEEECCCCEEEEEEECCCEEEEEEEEECCCCCEEEECCCCCCH
LSLVRSWRDDACKLLAQGIDPGANCKSQKTVKQGQEANSFEVIARRRSKPWWPALGFLFT
HHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHH
RDYIIDLHMLSIS
HHEEEEEEEEEEC
>Mature Secondary Structure
MKLNDVAVRKAKPESKSYKMADGGGMYLEVMPNGSKYWWLKYRFGGKEKRLACGVYPDVP
CCCCCCEEECCCCCCCCEEEECCCCEEEEEEECCCEEEEEEEEECCCCCEEEECCCCCCH
LSLVRSWRDDACKLLAQGIDPGANCKSQKTVKQGQEANSFEVIARRRSKPWWPALGFLFT
HHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHH
RDYIIDLHMLSIS
HHEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]