Click here to switch to the map view.

The map label for this gene is rpoX [H]

Identifier: 82701218

GI number: 82701218

Start: 86952

End: 87254

Strand: Reverse

Name: rpoX [H]

Synonym: Nmul_A0083

Alternate gene names: 82701218

Gene position: 87254-86952 (Counterclockwise)

Preceding gene: 82701219

Following gene: 162139866

Centisome position: 2.74

GC content: 52.15

Gene sequence:

>303_bases
ATGAACATCCATGTCACAGGTCGGCAGGTCGAAATCACCCCTCCATTGCGCGAGTATGTTGTTTCCAAATTGAGCCGCAT
CACTCAACGTTTCGACCAGATTGTGGATATCACTGTGACCCTTTCCGTGGAAAAGTTGGAGCACAAGGCGGAGGCGCTGG
CGCGAGTCCCTGGCAACGATATTTTTGTCGAGGCGGACAGCACGGACATGTACGCTTCCATAGATGATCTCGTTGATAAA
CTCGAGCGCCAGCTGGTCCGCCGCAAGGAGAAAAATGAAAGCCAACGCACGGATACCGTTTAA

Upstream 100 bases:

>100_bases
TTGCTCGCCGTACCGTAGCAAAATATCGGGAGTCCTTGCAAATTCCTTCCGTCAATCTTCGGAAATCGTTTTAACCACAG
TCATTTCATAGGAGCCACAA

Downstream 100 bases:

>100_bases
GAAATTCCGGATCAGGGCAATTTGAACCAAAGATCAGGTGGAGCAACGATAAAGGGCTCTGCACCAATACGGGCTCAGCA
CCGCTTCTCGCTCCGAAACC

Product: sigma 54 modulation protein/ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 100

Protein sequence:

>100_residues
MNIHVTGRQVEITPPLREYVVSKLSRITQRFDQIVDITVTLSVEKLEHKAEALARVPGNDIFVEADSTDMYASIDDLVDK
LERQLVRRKEKNESQRTDTV

Sequences:

>Translated_100_residues
MNIHVTGRQVEITPPLREYVVSKLSRITQRFDQIVDITVTLSVEKLEHKAEALARVPGNDIFVEADSTDMYASIDDLVDK
LERQLVRRKEKNESQRTDTV
>Mature_100_residues
MNIHVTGRQVEITPPLREYVVSKLSRITQRFDQIVDITVTLSVEKLEHKAEALARVPGNDIFVEADSTDMYASIDDLVDK
LERQLVRRKEKNESQRTDTV

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=91, Percent_Identity=46.1538461538462, Blast_Score=92, Evalue=5e-21,
Organism=Escherichia coli, GI1788949, Length=99, Percent_Identity=31.3131313131313, Blast_Score=66, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 11510; Mature: 11510

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIHVTGRQVEITPPLREYVVSKLSRITQRFDQIVDITVTLSVEKLEHKAEALARVPGND
CCEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCE
IFVEADSTDMYASIDDLVDKLERQLVRRKEKNESQRTDTV
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNIHVTGRQVEITPPLREYVVSKLSRITQRFDQIVDITVTLSVEKLEHKAEALARVPGND
CCEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCE
IFVEADSTDMYASIDDLVDKLERQLVRRKEKNESQRTDTV
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2602128; 12534463 [H]