| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yjjI [H]
Identifier: 82546729
GI number: 82546729
Start: 4492791
End: 4494101
Strand: Reverse
Name: yjjI [H]
Synonym: SBO_4441
Alternate gene names: 82546729
Gene position: 4494101-4492791 (Counterclockwise)
Preceding gene: 82546735
Following gene: 82546728
Centisome position: 99.43
GC content: 53.24
Gene sequence:
>1311_bases GTGCCACTTCACGAATGGCTGGAGCTGGAAGGCGCGAAAGATCTTGATGACGCACTCTCTCTGCTGACCATTCTTTACCA CCACGTACCGTCGGTCACATCGATGCCGGTCTACCTAGGGCAACTGGATGCGTTGTTGCAACCGCATGTTAGAATTCTAA CACAAGACGAGATCGATGTTCGAATAAAACGTTTCTGGCGTTACCTCGACGGAACCCTGCCAGACGCCTTTATGCACGCC AATATCGGCCCGTCTGATTCGCCCATTACCCGCGCGATCTTACGTGCAGACGCAGAGTTGAAGCAGGTTTCACCGAACCT GACCTTTATCTACGATCCTGAAATCCCCCCTGATGACCTGCTGCTGGAAGTGGCGAAGAACATCTGTGAATGTAGCAAAC CGCACATCGCCAACGGTCCGGTGCATGATAAAATTTTCACAAAAGGGGGCTACGGGATTGTGAGCTGTTACAACTCACTG CCGCTGGCGGGTGGTGGCAGCACGCTGGTACGCCTTAACCTGAAAGCCATTGCCGAGCGCAGCGAATCGCTGGATGACTT CTTTACGCGCACTCTACCGCACTACTGCCAGCAGCAGATCGCCATCATCGATGCGCGGTGTGAATTCCTCTATCAACAAT CACACTTCTTTGAGAATAGCTTCCTGGTGAAAGAAGGGCTGATTAACCCTGAACGTTTTGTGCCAATGTTTGGCATGTAT GGGCTGGCGGAAGCGGTTAACTTGCTGTGTGAGAAAGAAGGGATTGCCGCGCGCTACGGTAAAGAAGCCGCCGCAAATGA AGTGGGTTATCGCATCAGCGCGCAACTGGCGGAGTTTGTCGCCAATACCCCCGTGAAATATGGCTGGCAAAAACGCGCCA TGTTACACGCACAGTCGGGGATCAGTTCCGATATCGGCACCACGCCGGGCGCGCGTTTGCCGTATGGCGATGAGCCAGAT CCGATCATCCATCTGCAAACTGTCGCCCCGCATCATGCTTATTATTATTCCGGCATCAGCGACATTCTGACGCTCGACGA AACCATCAAACGTAATCCGCAGGCGCTGGTACAGCTTTGCCTCGGTGCCTTTAAAGCCGGAATGCGTGAATTTACCGCCA ATGTCAGCGGTAACGATCTGGTTCGCGTTACCGGTTATATGGTGCGTTTGTCGGATTTAGAAAAATATCGCGCCGAAGGT TCACGCACCAACACCACCTGGCTGGGCGAAGAAGCCACACGCAACACTCGTATTCTGGAACGCCAGCCGCGCGTGATAAG CCATGAACAGCAGATGCGCTTTAGTCAGTAA
Upstream 100 bases:
>100_bases TTCGCGTTTAAACTCTGCGCTAAAATTTCTTTTTTTCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTG TTCAGGTGGCCAAATTCAGT
Downstream 100 bases:
>100_bases GATTATCCCCTTCTCCTGCGTTGACGGGCCAGGCAGTCGTCTGGCTCTGTTTCTGCAGGGCTGCAATCTGCGCTGCAAAA ACTGTCACAATCCGTGGACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MPLHEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPHVRILTQDEIDVRIKRFWRYLDGTLPDAFMHA NIGPSDSPITRAILRADAELKQVSPNLTFIYDPEIPPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSL PLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMY GLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPD PIIHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEG SRTNTTWLGEEATRNTRILERQPRVISHEQQMRFSQ
Sequences:
>Translated_436_residues MPLHEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPHVRILTQDEIDVRIKRFWRYLDGTLPDAFMHA NIGPSDSPITRAILRADAELKQVSPNLTFIYDPEIPPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSL PLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMY GLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPD PIIHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEG SRTNTTWLGEEATRNTRILERQPRVISHEQQMRFSQ >Mature_435_residues PLHEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPHVRILTQDEIDVRIKRFWRYLDGTLPDAFMHAN IGPSDSPITRAILRADAELKQVSPNLTFIYDPEIPPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLP LAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMYG LAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDP IIHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGS RTNTTWLGEEATRNTRILERQPRVISHEQQMRFSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0521 [H]
Homologues:
Organism=Escherichia coli, GI1790840, Length=432, Percent_Identity=98.8425925925926, Blast_Score=887, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016905 [H]
Pfam domain/function: PF11230 DUF3029 [H]
EC number: NA
Molecular weight: Translated: 48893; Mature: 48762
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLHEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPHVRILTQDEIDV CCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHEEEECCHHHH RIKRFWRYLDGTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNLTFIYDPEIPPDDL HHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHCCHHHHCCCCEEEEECCCCCHHHH LLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAER HHHHHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEHHCCCCCCCCCCEEEEEEHHHHHHH SESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHH GLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSG HHHHHHHHHHHCCCCHHHHCCHHHHHHHCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHCC ISSDIGTTPGARLPYGDEPDPIIHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLC CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCHHHHHHHHHHHHCCHHHHHHHH LGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEATRNTRILE HHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEECCCHHHCCCHHHH RQPRVISHEQQMRFSQ CCCCHHCCHHHHCCCC >Mature Secondary Structure PLHEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPHVRILTQDEIDV CHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHEEEECCHHHH RIKRFWRYLDGTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNLTFIYDPEIPPDDL HHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHCCHHHHCCCCEEEEECCCCCHHHH LLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAER HHHHHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEHHCCCCCCCCCCEEEEEEHHHHHHH SESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHH GLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSG HHHHHHHHHHHCCCCHHHHCCHHHHHHHCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHCC ISSDIGTTPGARLPYGDEPDPIIHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLC CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCHHHHHHHHHHHHCCHHHHHHHH LGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEATRNTRILE HHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEECCCHHHCCCHHHH RQPRVISHEQQMRFSQ CCCCHHCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 3019678 [H]