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The map label for this gene is intB [H]

Identifier: 82546619

GI number: 82546619

Start: 4371745

End: 4372749

Strand: Direct

Name: intB [H]

Synonym: SBO_4322

Alternate gene names: 82546619

Gene position: 4371745-4372749 (Clockwise)

Preceding gene: 82546618

Following gene: 82546627

Centisome position: 96.72

GC content: 48.36

Gene sequence:

>1005_bases
ATGGCACTGACTGACGCAAAAATCCGGGCTGCAAAGCCCACTGACAAGGCTTATAAACTCACTGACGGGACTGGCATGTT
CCTGCTGGTACATCCTAATGGCTCCCGTTACTGGCGTCTCCGTTATCGTATTCTGGGTAAGGAGAAGACTCTGGCACTTG
GTGTGTATCCAGAAGTTTCTCTCTCCGAAGCTCGTACAAAACGGGATGAGGCCCGAAAACTGATTTCGGAGGGGGTTGAC
CCTTGCGAACAGAAAAGAGCTAAAAAAGTAGTCCCTGATTTACAGCTCTCTTTTGAACATATTGCGCGACGCTGGCATGC
CAGTAATAAACAATGGGCACAATCACACAGCGATAAAGTACTCAAAAGCCTCGAGACTCACGTTTTCCCCTTTATCGGCA
ACCGGGATATCACAACACTCAATACCCCGGATCTGCTTATCCCTGTTCGTGCTGCAGAAGCTAAACAAATTTATGAAATC
GCCAGTCGTCTGCAGCAAAGAATATCTGCCGTAATGCGTTATGCCGTACAGTCTGGCATCATCAGATATAATCCTGCTCT
GGATATGGCTGGCGCATTGACTACGGTAAAACGCCAGCATCGCCCCGCTCTTGATCTTTCTCGCCTGCCTGAACTTTTGT
CGCGTATTGGCAGTTACAAAGGGCAAACTGTCACCCAGCTTGCCGTTATGCTGAATTTACTGGTTTTTATTCGTTCCAGT
GAACTCAGATACGCCCGCTGGTCTGAAATTGATATTGACAATGCCATGTGGACTATTCCAGCCGAACGCGAACCCCTGCC
AGGCGTAAAATTCTCACACCGGGGCTCCAAGATGCGAACACCACATCTTGTGCCACTCAGCAAACAGGCTGTAGCCATAC
TGACAGAACTACAGACATGGGCTGGTGAAAATGGTCTGATCTTTACGGGAGCACATGACCCGCGTAAACCAATCAGTGAA
AATGTAATGAACGCATCTCACACAATTAAACACGGAGCAGTATGA

Upstream 100 bases:

>100_bases
AGATTCCCCCCACATCAACCCCATTGTGTGGGTATAATTGCGGGCATACCCCAGTTCGACAGAATTTGTACCCTCTTTAA
CGCATTCAGAAGGCTGAACT

Downstream 100 bases:

>100_bases
TGGTTAAAAGGGTGAAACTGGCAGGTGTGGAGCCTCGCAGATTTCCGGCATCATAGTGCCCAATACGGGATGCATAAAGC
TCCCTCAGACTGGAGACTCC

Product: P4-type integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVD
PCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEI
ASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQTVTQLAVMLNLLVFIRSS
ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWAGENGLIFTGAHDPRKPISE
NVMNASHTIKHGAV

Sequences:

>Translated_334_residues
MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVD
PCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEI
ASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQTVTQLAVMLNLLVFIRSS
ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWAGENGLIFTGAHDPRKPISE
NVMNASHTIKHGAV
>Mature_333_residues
ALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDP
CEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIA
SRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQTVTQLAVMLNLLVFIRSSE
LRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWAGENGLIFTGAHDPRKPISEN
VMNASHTIKHGAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=316, Percent_Identity=37.3417721518987, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI1788690, Length=323, Percent_Identity=34.0557275541796, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1788974, Length=331, Percent_Identity=34.1389728096677, Blast_Score=181, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37681; Mature: 37550

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
CCCCCCCEEECCCCCCCEEEECCCEEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCC
LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
HHHHHHHHCEEECCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQTVTQLAVMLNLLVFIRSS
EEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW
CCCEECCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AGENGLIFTGAHDPRKPISENVMNASHTIKHGAV
CCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS
CCCCCCEEECCCCCCCEEEECCCEEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCC
LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI
HHHHHHHHCEEECCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQTVTQLAVMLNLLVFIRSS
EEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW
CCCEECCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AGENGLIFTGAHDPRKPISENVMNASHTIKHGAV
CCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]