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The map label for this gene is ydiF [H]

Identifier: 82546549

GI number: 82546549

Start: 4299160

End: 4300701

Strand: Direct

Name: ydiF [H]

Synonym: SBO_4244

Alternate gene names: 82546549

Gene position: 4299160-4300701 (Clockwise)

Preceding gene: 82546548

Following gene: 82546550

Centisome position: 95.12

GC content: 52.92

Gene sequence:

>1542_bases
ATGCGTAAGATAACAACCGCCGAGGCACTGGCGGCGCAAATTCAGGACGGTGCGACTATTGCTATTAGCGGTAACGGCGG
CGGTATGGTAGAAGCCGACCATATTCTGGCTGCTATTGAAGCGCGTTTCCTGCAAACCGGACACCCTCGCGACCTGACGC
TAATCCACTCGCTGGGTATTGGCGATCGCGACTGCAAAGGCACTAACCGTTTTGCGCACGCAGAGATGCTCAAACGCATT
ATTGCCGGGCACTTTACCTGGTCGCCCAAAATGCAGGCGCTGGTAAAAAATAACACGATTGAAGCCTACTGCTTTCCTGG
TGGCGTGATTCAGGCACTGCTACGGGAGATCGGCTCCGGACGTCCGGGGCTTTTTACCCACGTTGGGCTGGGATCGTTTG
TTGATCCACGCAATGGCGGCGGTAAGTCGAATGAATGCACTACCGACGACCTGGTAGAACTGATTGAAATCGACGGTAAA
ACCAAACTTCGTTATCGCCCTTTCAAAGTGGATTACGCGATTTTGCGTGGCACTTATGCCGATCCTCGAGGCAACGTCAG
CCTTGAAGAAGAAGCGATTGATATGGATAGCTATTCCATGGCGCTGGCAGCACACAACAGCGGCGGCAAAGTGTTCGTAC
AGGTACGCGATGTGCTGGAAGCTGGCGCGATTGAACCACGCCGAGTCAAATTACCGGGCATTCTAGTTGATGGCATCGTT
GAACACCGCAAACAGCCACAAACCTATCTTGGCGGTTACGACCTGACCATCAGCGGCCAACATCGCCGTCTGAGTTCTAA
CGACGCTATTGAACTGGTTAGTCATCCGGTACGTCGCCTGATTGCCCGTCGGGCAGCACGCGAACTGGTAGCTGGCGCTT
CAACCAACTTTGGCTTTGGTATTCCCGGCGGCGTTCCAGGAGTAGCGCTGCGCGAAGGCGTTCCTTACCAAAGTTTATGG
CTGAGCGTCGAGCAAGGCGTACATAACGGCATGATGCTGGATGATGCGTTTTTCGGCTGCGCCCGCAACGCCGATGCCAT
TATTCCATCACTCGATCAATTTGAGTTCTACAGTGGCGGAGGGATCGATATCACCTTCCTCGGCATGGGAGAGATGGATC
AGTACGGTAACGTCAACGTCTCCCATCTCAATGGCAATCTGATTGGCCCCGGCGGATTTCTCGAAATTGCGCAAAATGCC
CGTAAAGTGGTGTTCTGCGGCACGTTCGACGCTAAAGGCAGCAAGATCGATATAACACCAGATGGCTTGCATATCGCCCA
GTCAGGTCAAATCCCTAAACTGGTTACCAAGGTGGAAAAAATCACTTTTAGCGCCGCCTACGCACAGCAAAGTGGTCAGG
AAGTGTTGTATATCACTGAACGCGCAGTATTCCAGTTAACGGCAGAAGGCGTTGAATTAATTGAAATCGCGCCGGGTGTG
GAGATTGAGCGCGACATTCTGCCGTATATGGCTTTCCGTCCAATTATCAAGCACCCACGCCTGATGGAAAGTAGCCTGTT
TACGCCGATGGAGGATGCATGA

Upstream 100 bases:

>100_bases
ACTGGCCGGATTAATGTCCGCCACTCAGGATTGCCAGCAGGCGACGCGCGCCTTTGCCGAAAAAAGTAGCGTGAGCTTCC
ATAATCAATAAGGAAATTGT

Downstream 100 bases:

>100_bases
GTCAGCTTGATGACACCATCCTTGATGCGCTGACGCACGTTACTTTCCCAAAGGGTTTTGCACAGGCAGAGCCCGCATGG
GTTGTCACGGTAGACGGTGT

Product: enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGIGDRDCKGTNRFAHAEMLKRI
IAGHFTWSPKMQALVKNNTIEAYCFPGGVIQALLREIGSGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGK
TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
EHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFGIPGGVPGVALREGVPYQSLW
LSVEQGVHNGMMLDDAFFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNA
RKVVFCGTFDAKGSKIDITPDGLHIAQSGQIPKLVTKVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA

Sequences:

>Translated_513_residues
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGIGDRDCKGTNRFAHAEMLKRI
IAGHFTWSPKMQALVKNNTIEAYCFPGGVIQALLREIGSGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGK
TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
EHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFGIPGGVPGVALREGVPYQSLW
LSVEQGVHNGMMLDDAFFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNA
RKVVFCGTFDAKGSKIDITPDGLHIAQSGQIPKLVTKVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA
>Mature_513_residues
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGIGDRDCKGTNRFAHAEMLKRI
IAGHFTWSPKMQALVKNNTIEAYCFPGGVIQALLREIGSGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGK
TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
EHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFGIPGGVPGVALREGVPYQSLW
LSVEQGVHNGMMLDDAFFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNA
RKVVFCGTFDAKGSKIDITPDGLHIAQSGQIPKLVTKVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA

Specific function: Unknown

COG id: COG4670

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae AtoD [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=501, Percent_Identity=24.3512974051896, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI11545841, Length=418, Percent_Identity=25.5980861244019, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1787985, Length=508, Percent_Identity=39.3700787401575, Blast_Score=367, Evalue=1e-102,
Organism=Escherichia coli, GI1788551, Length=244, Percent_Identity=25.8196721311475, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014388
- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: NA

Molecular weight: Translated: 55602; Mature: 55602

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGI
CCCCCHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCC
GDRDCKGTNRFAHAEMLKRIIAGHFTWSPKMQALVKNNTIEAYCFPGGVIQALLREIGSG
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC
RPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGKTKLRYRPFKVDYAILRGTYA
CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECEEEEEEEEECCCC
DPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
CCCCCCEEHHHHCCCCCCEEEEEEECCCCEEEEEEEHHHHHCCCCCCEEECCCCHHHHHH
EHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFG
HHCCCCCHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IPGGVPGVALREGVPYQSLWLSVEQGVHNGMMLDDAFFGCARNADAIIPSLDQFEFYSGG
CCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCCCCCEEEECCC
GIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNARKVVFCGTFDAKGSKIDITP
CEEEEEEECCCCCCCCCEEEEEECCCEECCCHHHHHHCCCCEEEEEEEECCCCCEEEECC
DGLHIAQSGQIPKLVTKVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
CCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCEEEEEECCCC
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA
EEHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGI
CCCCCHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCC
GDRDCKGTNRFAHAEMLKRIIAGHFTWSPKMQALVKNNTIEAYCFPGGVIQALLREIGSG
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC
RPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGKTKLRYRPFKVDYAILRGTYA
CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECEEEEEEEEECCCC
DPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
CCCCCCEEHHHHCCCCCCEEEEEEECCCCEEEEEEEHHHHHCCCCCCEEECCCCHHHHHH
EHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFG
HHCCCCCHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IPGGVPGVALREGVPYQSLWLSVEQGVHNGMMLDDAFFGCARNADAIIPSLDQFEFYSGG
CCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCCCCCEEEECCC
GIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNARKVVFCGTFDAKGSKIDITP
CEEEEEEECCCCCCCCCEEEEEECCCEECCCHHHHHHCCCCEEEEEEEECCCCCEEEECC
DGLHIAQSGQIPKLVTKVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
CCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCEEEEEECCCC
EIERDILPYMAFRPIIKHPRLMESSLFTPMEDA
EEHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 3541912; 7984428 [H]