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The map label for this gene is ytfM [H]

Identifier: 82546529

GI number: 82546529

Start: 4279081

End: 4280814

Strand: Reverse

Name: ytfM [H]

Synonym: SBO_4223

Alternate gene names: 82546529

Gene position: 4280814-4279081 (Counterclockwise)

Preceding gene: 82546532

Following gene: 82546528

Centisome position: 94.71

GC content: 53.29

Gene sequence:

>1734_bases
GTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACA
GGTCGAGGGGTTATCGGGACAGCTGGAAAAGAACGTTCGTGCGCAGCTTTCTACGATTGAAAGTGATGAAGTGACGCCAG
ACCGCCGCTTTCGCGCACGCGTCGATGATGCCATCCGTGAAGGTCTGAAAGCGCTGGGTTATTACCAGCCGACCATTGAA
TTTGATCTCCGTCCACCGCCAAAGAAAGGGCGGCAGGTATTGATCGCCAAAGTCACGCCAGGTGTGCCGGTGTTAATTGG
CGGCACCGATGTGGTATTGCGCGGCGGCGCGCGGACCGATAAAGACTATTTGAAATTGCTCGATACTCGCCCGGCTATTG
GTACGGTACTGAACCAGGGCGATTATGAAAATTTCAAAAAGTCCTTAACCAGTATTGCGTTGCGTAAAGGTTATTTCGAT
AGCGAATTTACCAAAGCGCAGCTGGGCATTGCGCTCGGCCTGCATAAAGCCTTCTGGGATATTGATTATAACAGTGGCGA
ACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAG
AGGGCGATGAGTATGAATCGAAAGATCTGGCGGAACTGAACCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTG
GTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACAC
CATCGAAACCGGGGTCGGTTACTCTACGGACGTGGGACCGCGCGTGAAAGCGACGTGGAAAAAGCCGTGGATGAACTCAT
ACGGTCACAGTTTGACCACCAGTACCAGTATTTCCGCGCCGGAACAGACCCTCGACTTCAGCTATAAAATGCCGCTGCTG
AAGAATCCACTGGAACAATATTATTTGGTGCAGGGCGGTTTTAAGCGCACTGACCTGAACGATACCGAATCTGACTCCAC
TACGCTGGTGGCTTCTCGCTACTGGGATCTCTCCAGCGGTTGGCAGCGTGCCATTAACCTGCGCTGGAGTCTCGACCACT
TTACTCAGGGTGAAATTACCAACACCACGATGCTGTTTTATCCTGGGGTGATGATTAGCCGCACGCGTTCTTGTGGTGGC
CTGATGCCAACCTGGGGCGACTCGCAACGCTACTCTATCGACTACTCCAACACGGCCTGGGGCTCAGATGTCGATTTCTC
CGTTTTCCAGGCGCAGAACGTCTGGATCCGCACACTGTACGATCGCCATCGTTTCGTTACACGCGGCACGCTGGGCTGGA
TTGAAACCGGTGATTTCGACAAAGTACCGCCGGATCTGCGTTTTTTCGCCGGGGGCGATCGCAGTATTCGCGGCTACAAA
TACAAATCTATCGCCCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCA
GTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGTCGATAGTGGCGAAGCGGTAAGCGATATTCGCCGCAGCGACT
TTAAAACCGGTACCGGGGTCGGCGTGCGCTGGGAATCGCCGGTCGGGCCAATCAAACTCGATTTTGCCGTACCGGTCGCG
GATAAAGACGAACACGGGTTACAGTTTTACATCGGTCTGGGGCCAGAATTATGA

Upstream 100 bases:

>100_bases
ATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAA
AAGGATATTCAGGAGAAAAT

Downstream 100 bases:

>100_bases
GTTTATGGAAAAAAATCAGCCTCGGCGTGGTTATCGTTATCTTACTGTTGCTGGGATCGGTGGCGTTTCTGGTGGGCACC
ACCAGCGGCCTGCATCTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 577

Protein sequence:

>577_residues
MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIE
FDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD
SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVV
VAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLL
KNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSCGG
LMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYK
YKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVA
DKDEHGLQFYIGLGPEL

Sequences:

>Translated_577_residues
MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIE
FDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD
SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVV
VAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLL
KNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSCGG
LMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYK
YKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVA
DKDEHGLQFYIGLGPEL
>Mature_577_residues
MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIE
FDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD
SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVV
VAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLL
KNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSCGG
LMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYK
YKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVA
DKDEHGLQFYIGLGPEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=577, Percent_Identity=99.8266897746967, Blast_Score=1179, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64744; Mature: 64744

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRAR
CHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
VDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTD
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEECCCEEEEECCCCCC
KDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFDSEFTKAQLGIALGLHKAFWD
HHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEHHEEE
IDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVV
EECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEE
VAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTT
EECCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCHHHCCCCEEC
STSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSG
CCCCCCCHHHCCCEECCCHHHCHHHHEEEECCCCEECCCCCCCCCCEEEEEEECCCCCCC
WQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSCGGLMPTWGDSQRYSIDYSNTAW
CHHEEEEEEECCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCEEEEECCCCCC
GSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYK
CCCCCEEEEEECCEEEEEHHHHHHEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCEE
YKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGV
ECCCCCCCCCCCCCCCHHEEEEEEEEEEECCEEEEEEEEEECCCHHHHHHHHCCCCCCCC
GVRWESPVGPIKLDFAVPVADKDEHGLQFYIGLGPEL
CEEECCCCCCEEEEEEECCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRAR
CHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
VDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTD
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEECCCEEEEECCCCCC
KDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFDSEFTKAQLGIALGLHKAFWD
HHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEHHEEE
IDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVV
EECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEE
VAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTT
EECCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCHHHCCCCEEC
STSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSG
CCCCCCCHHHCCCEECCCHHHCHHHHEEEECCCCEECCCCCCCCCCEEEEEEECCCCCCC
WQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSCGGLMPTWGDSQRYSIDYSNTAW
CHHEEEEEEECCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCEEEEECCCCCC
GSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYK
CCCCCEEEEEECCEEEEEHHHHHHEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCEE
YKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGV
ECCCCCCCCCCCCCCCHHEEEEEEEEEEECCEEEEEEEEEECCCHHHHHHHHCCCCCCCC
GVRWESPVGPIKLDFAVPVADKDEHGLQFYIGLGPEL
CEEECCCCCCEEEEEEECCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]