Definition Shigella boydii Sb227, complete genome.
Accession NC_007613
Length 4,519,823

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The map label for this gene is yjgI [H]

Identifier: 82546505

GI number: 82546505

Start: 4248347

End: 4249060

Strand: Direct

Name: yjgI [H]

Synonym: SBO_4198

Alternate gene names: 82546505

Gene position: 4248347-4249060 (Clockwise)

Preceding gene: 82546500

Following gene: 82546506

Centisome position: 93.99

GC content: 54.34

Gene sequence:

>714_bases
ATGGGCGCTTTTACAGGTAAGACAGTTCTCATCCTCGGTGGTAGCCGTGGAATCGGTGCCGCTATCGTACGTCGTTTCGT
CACCGATGGGGCCAATGTACGATTCACCTATGCGGGGTCGAAAGATGCCGCTGAACGCCTGGCACAAGAGACTGGAGCGA
CAGCAGTATTCACAGATAGTGCTGACAAAGACGCTGTTATTGATGTCGTTCGTAAGAGCGGCGCATTGGATATCCTGGTG
GTAAATGCAGGTATTGGCGTCTTTGGCGATGCCCTGGAATTAAATGCCGACGATATTGATCGCCTTTTCAAAATCAATAT
TCATGCTCCTTACCATGCCTCTGTTGAAGCCGCCCGGCAGATGCCCGAAGGCGGACGCATCTTAATCATCGGCTCCGTGA
ATGGCGATCGTATGCCTGTTGCAGGCATGGCTGCTTATGCCGCCAGTAAATCTGCCCTGCAAGGCATGGCGCGCGGGCTG
GCCCGTGATTTCGGACCGCGTGGGATCACCATCAACGTCGTCCAGCCAGGGCCAATTGATACCGACGCTAATCCCGCCAA
CGGGCCAATGCGCGATATGTCGCATAGTTTTATGGCCATCAAAAGACATGGGCAACCGGAAGAGGTCGCTGGTATGGTCG
CATGGTTAGCAGGGCCAGAAGCCAGTTTTGTTACCGGCGCGATGCATACCATTGATGGCGCGTTTGGCGCATAA

Upstream 100 bases:

>100_bases
TGGAACGCGAGATTGTTTTTTAGTGACCATTACAAAACTTGTTGACAGAAAGTTAAAACAGTTTTGTAATGCATGTTACA
TAATAAATCAAGGAGTCCTT

Downstream 100 bases:

>100_bases
CCGACTACGCTCAATTAAGCCCAGCCATTTCCCATGATGTCTGGGTTTTGTTTACTCACGTCGTCCGCTAAAAGCGGCTC
CTGGTAAATATAAATCTTCT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADKDAVIDVVRKSGALDILV
VNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGL
ARDFGPRGITINVVQPGPIDTDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

Sequences:

>Translated_237_residues
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADKDAVIDVVRKSGALDILV
VNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGL
ARDFGPRGITINVVQPGPIDTDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>Mature_236_residues
GAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADKDAVIDVVRKSGALDILVV
NAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLA
RDFGPRGITINVVQPGPIDTDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=28.6885245901639, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI5031737, Length=241, Percent_Identity=26.1410788381743, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI126723750, Length=240, Percent_Identity=27.9166666666667, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=25.7731958762887, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=245, Percent_Identity=26.9387755102041, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI7705925, Length=240, Percent_Identity=24.5833333333333, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=27.8688524590164, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=27.9166666666667, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=31.3492063492063, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI223718074, Length=215, Percent_Identity=29.7674418604651, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI2367365, Length=237, Percent_Identity=97.8902953586498, Blast_Score=463, Evalue=1e-132,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=34.251968503937, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=36.0995850622407, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=31.3008130081301, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=27.3469387755102, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI2367175, Length=242, Percent_Identity=32.6446280991736, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=28.0632411067194, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=29.8387096774194, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=32.0987654320988, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=27.5303643724696, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789208, Length=178, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=30.6878306878307, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=30.3149606299213, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=28.2258064516129, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=29.7959183673469, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=29.9180327868852, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=192, Percent_Identity=30.2083333333333, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=28.2442748091603, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=28.3524904214559, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=29.4339622641509, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=251, Percent_Identity=28.6852589641434, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=29.1338582677165, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=28.4615384615385, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=192, Percent_Identity=28.125, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=250, Percent_Identity=28, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=26.5384615384615, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=242, Percent_Identity=26.8595041322314, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=28.4090909090909, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=25.5555555555556, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=27.9850746268657, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=26.8199233716475, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=26.7175572519084, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=245, Percent_Identity=26.1224489795918, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=29.3233082706767, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=27.2, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=33.6032388663968, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=30.1652892561983, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=30.4526748971193, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=30.4347826086957, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=28.6885245901639, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=29.2, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=30, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644337, Length=172, Percent_Identity=33.7209302325581, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=28.6274509803922, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641232, Length=207, Percent_Identity=28.9855072463768, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24565; Mature: 24434

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDS
CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCEEEEECC
ADKDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQ
CCCHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECHHHCCEEEEEEECCCCCCHHHHHHC
MPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPID
CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
TDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDS
CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCEEEEECC
ADKDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQ
CCCHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECHHHCCEEEEEEECCCCCCHHHHHHC
MPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPID
CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
TDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]