| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yjgL [H]
Identifier: 82546501
GI number: 82546501
Start: 4246040
End: 4246963
Strand: Reverse
Name: yjgL [H]
Synonym: SBO_4194
Alternate gene names: 82546501
Gene position: 4246963-4246040 (Counterclockwise)
Preceding gene: 82546502
Following gene: 82546499
Centisome position: 93.96
GC content: 34.09
Gene sequence:
>924_bases ATGAGCAAAATATCAGATTTGAATTATTCTCAACACATTACATTAGCCGACAATTTTAAACAAAAAAGTGAAGTTTTAAA TACCTGGCGTGTTGGAATGAATAATTTTGCCCGTAATGCCGAGGGGCAGGATAACACAAGAAATATCCTTGATCCTAAGA CATTTTTGGAATTTTTGGTAAAAATATTTACTCTAGGTTATGTGGATTTTAGCAAACGCTCCAACGAAGCGGGAAGAAAT ATGATGGCTCATATTGAGTCCTCATCTTATATCAAAAATAATGATGGCAGTGAGATAATAAAGTTTGTTATGAATAATCC TGAAGGGGAACGAGCGGATTTATCTAAGGTGGAAATAGAAATCACACTTTCCACTTTCACTACTATGGGGACTCGTCAAG GACATACGGCTATTATATTTCAACAACCTGATGGTTCGACTAATCGTTATGAAGGAAAGTCCTTTGAAAGAAAAGATGAG AGTTCATTACACCTGATTACTAACAAGATTCTGGCATGTTACCAACGCGAAGCTAACAAGGAAATAGCTCGTCTATTAAA TATTTCACAGGAGTTAAATAATTCTCAGGACTTGAATAACTCGCAGGTGAGTTGTAAAGATTCAGTTGATTCTACGATTA CGGATTTATTAGAAAAACCATTGAATAATGCATTATTAGCAATAAGGAAAGAACATCTGCTATTAATGCCTTATGTATGT AATGAATCGATTTCATACTTGCTTGGTGAAAAAGGGATACTGAAAGAAATAGATGACCTTAACGCAGTAAATAATTATCT TCTTAATAATAAGAAAGCTACTGACAATGAAATTAATGACATCAAAGTTAACCTGTCTCATATTCTTATTGATTCCTTAG ATGATGCAAAAGTTAACCTTACACCGGTCATCGATTCTGGATGA
Upstream 100 bases:
>100_bases CCAGGTTTACGGCGAGTTTGTGAAAAGAGCGTTTTTTGATATTTTTTTGTGAGTAAAATTTGTAATGCTTAGACGTTCTT ATTAACTCAAGGAGTTCGTC
Downstream 100 bases:
>100_bases CTTTTTTAAAATCCCCATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGAATGCAATATTTTGGTGAT TCTGAAAAGATAAAGTATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAEGQDNTRNILDPKTFLEFLVKIFTLGYVDFSKRSNEAGRN MMAHIESSSYIKNNDGSEIIKFVMNNPEGERADLSKVEIEITLSTFTTMGTRQGHTAIIFQQPDGSTNRYEGKSFERKDE SSLHLITNKILACYQREANKEIARLLNISQELNNSQDLNNSQVSCKDSVDSTITDLLEKPLNNALLAIRKEHLLLMPYVC NESISYLLGEKGILKEIDDLNAVNNYLLNNKKATDNEINDIKVNLSHILIDSLDDAKVNLTPVIDSG
Sequences:
>Translated_307_residues MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAEGQDNTRNILDPKTFLEFLVKIFTLGYVDFSKRSNEAGRN MMAHIESSSYIKNNDGSEIIKFVMNNPEGERADLSKVEIEITLSTFTTMGTRQGHTAIIFQQPDGSTNRYEGKSFERKDE SSLHLITNKILACYQREANKEIARLLNISQELNNSQDLNNSQVSCKDSVDSTITDLLEKPLNNALLAIRKEHLLLMPYVC NESISYLLGEKGILKEIDDLNAVNNYLLNNKKATDNEINDIKVNLSHILIDSLDDAKVNLTPVIDSG >Mature_306_residues SKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAEGQDNTRNILDPKTFLEFLVKIFTLGYVDFSKRSNEAGRNM MAHIESSSYIKNNDGSEIIKFVMNNPEGERADLSKVEIEITLSTFTTMGTRQGHTAIIFQQPDGSTNRYEGKSFERKDES SLHLITNKILACYQREANKEIARLLNISQELNNSQDLNNSQVSCKDSVDSTITDLLEKPLNNALLAIRKEHLLLMPYVCN ESISYLLGEKGILKEIDDLNAVNNYLLNNKKATDNEINDIKVNLSHILIDSLDDAKVNLTPVIDSG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082399, Length=366, Percent_Identity=68.8524590163934, Blast_Score=468, Evalue=1e-133,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34684; Mature: 34552
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAEGQDNTRNILDPKTFLEFLV CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH KIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIIKFVMNNPEGERADLSKVEIE HHHHHCCHHHHHCCCHHHHHHEEEECCCCCEECCCHHHHHHHHHCCCCCCCCCCEEEEEE ITLSTFTTMGTRQGHTAIIFQQPDGSTNRYEGKSFERKDESSLHLITNKILACYQREANK EEEEHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH EIARLLNISQELNNSQDLNNSQVSCKDSVDSTITDLLEKPLNNALLAIRKEHLLLMPYVC HHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHH NESISYLLGEKGILKEIDDLNAVNNYLLNNKKATDNEINDIKVNLSHILIDSLDDAKVNL HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHEEECCCCCEEEE TPVIDSG EEEECCC >Mature Secondary Structure SKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAEGQDNTRNILDPKTFLEFLV CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH KIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIIKFVMNNPEGERADLSKVEIE HHHHHCCHHHHHCCCHHHHHHEEEECCCCCEECCCHHHHHHHHHCCCCCCCCCCEEEEEE ITLSTFTTMGTRQGHTAIIFQQPDGSTNRYEGKSFERKDESSLHLITNKILACYQREANK EEEEHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH EIARLLNISQELNNSQDLNNSQVSCKDSVDSTITDLLEKPLNNALLAIRKEHLLLMPYVC HHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHH NESISYLLGEKGILKEIDDLNAVNNYLLNNKKATDNEINDIKVNLSHILIDSLDDAKVNL HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHEEECCCCCEEEE TPVIDSG EEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]