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The map label for this gene is yijO [H]

Identifier: 82546305

GI number: 82546305

Start: 4006298

End: 4007149

Strand: Reverse

Name: yijO [H]

Synonym: SBO_3973

Alternate gene names: 82546305

Gene position: 4007149-4006298 (Counterclockwise)

Preceding gene: 82546306

Following gene: 82546299

Centisome position: 88.66

GC content: 52.58

Gene sequence:

>852_bases
ATGTATCACGACATCAGCTATCTGCTCTCCCGCCTGATCAACGGCCCGCTGTCCCTGCGCCAGATTTACTTTGCCAGCAG
TAACGGCCCGGTGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATA
CCGGCGCTGGAGCAACGTTAGTTCCCGGCGATGTGCTGTACGTTGCCGCTGGTGGCTGGAATTTCCCACAATGGAAAACA
CCCACTACCACCTTTAGCGTGCTGTTTGGCAAACAGCAACTCGGCTTCAGCGTCGTGCAATGGGATGGCAAACAATATCA
AAATCTGGCGAAGCAACACGTCGCCCGACGCGGCCCACGTATAGGTTCTTTTCTGCTACAAACGCTCAATGAAATGCAAA
TGCAGCCGCAGGAGCAGCAAACGGCAAGGCTTATCGTAGCCAGCCTGCTTAGCCACTGCCGCGATTTGCTCGGCAGCCAA
ATCCAGACCGCCTCACGCAGCCAGGCACTATTTGAAGCTATTCGCGATTATATCGACGAACGCTATGCCTCCGCGCTTAC
CCGCGAATCTGTCGCACAGGCATTCTATATTTCACCAAACTATCTCTCGCACCTGTTTCAAAAAACGGGGGCCATTGGTT
TTAACGAATACCTGAATCACACGCGACTGGAGCACGCTAAGACGTTATTGAAAGGCTATGACCTGAAGGTAAAAGAAGTG
GCGCACGCCTGCGGCTTTGTCGACAGCAACTACTTCTGCCGTCTGTTTCGTAAAAACACCGAACGCTCGCCGTCGGAATA
TCGCCGACAGTACCACAGCCAACTGACAGAAAAACCGACTACTCCAGAATAA

Upstream 100 bases:

>100_bases
GCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGCCTTTTTTAATAATGCCAGTTACTGTTTTCCCGTC
TACATACCTAAGGGAATAAC

Downstream 100 bases:

>100_bases
GATGGGTTTGCTGCGGCGCAGAAAGCACTTTGCGCACCGCGCTCATTACCCGCTGCGGCTCACGCAGGAATGCGTAGATG
CTGCATTGCACATAGCGGCA

Product: ARAC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MYHDISYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVAAGGWNFPQWKT
PTTTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
IQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE

Sequences:

>Translated_283_residues
MYHDISYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVAAGGWNFPQWKT
PTTTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
IQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
>Mature_283_residues
MYHDISYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVAAGGWNFPQWKT
PTTTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
IQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=283, Percent_Identity=98.2332155477032, Blast_Score=582, Evalue=1e-168,
Organism=Escherichia coli, GI1788725, Length=270, Percent_Identity=35.1851851851852, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1790339, Length=162, Percent_Identity=27.1604938271605, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32198; Mature: 32198

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHDISYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATL
CCCCHHHHHHHHHCCCHHHHHEEEECCCCCCCCCEEEECCCEEEEEEECCEEECCCCCEE
VPGDVLYVAAGGWNFPQWKTPTTTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPR
CCCCEEEEEECCCCCCCCCCCCHHHHHHHCHHHHCCCCEECCCHHHHHHHHHHHHHCCCH
IGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYHDISYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATL
CCCCHHHHHHHHHCCCHHHHHEEEECCCCCCCCCEEEECCCEEEEEEECCEEECCCCCEE
VPGDVLYVAAGGWNFPQWKTPTTTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPR
CCCCEEEEEECCCCCCCCCCCCHHHHHHHCHHHHCCCCEECCCHHHHHHHHHHHHHCCCH
IGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]