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The map label for this gene is rhaB [H]

Identifier: 82546254

GI number: 82546254

Start: 3949612

End: 3951024

Strand: Reverse

Name: rhaB [H]

Synonym: SBO_3922

Alternate gene names: 82546254

Gene position: 3951024-3949612 (Counterclockwise)

Preceding gene: 82546257

Following gene: 82546253

Centisome position: 87.42

GC content: 55.2

Gene sequence:

>1413_bases
ATGACCTTTCGCAATTGTGTCGCCGTCGATCTCGGCGCATCCAGTGGGCGCGTGATGCTGGCGCGTTACGAGCGTGAATG
CCGCAGCCTGACGCTGCGCGAAATCCATCGTTTTAACAATGGCCTGCATAGCCAGAACGGTTATGTCACCTGGAATGTGG
ATAGCCTGGAAAGTGCCATTCGCCTTGGATTAAACAAGGTGTGCGAGGAAGGGATTCGTATCGATAGCATTGGGATTGAT
ACCTGGGGCGTGGACTTTGTGCTGCTCGACCAACAGGGTCAGCGTGTGGGCCTGCCCGTTGCTTATCGCGATAGCCGCTC
CAATGGCCTAATGGCGCAGGCACAGCAACAACTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCT
TCAATACGCTTTATCAACTGCGTGCGCTGACGGAGCAACAACCTGAACTTATTCCACACATTGCTCACGCTCTGCTGATG
CCGGATTACTTCAGCTATCGCCTGACCGGCAAGATGAACTGGGAATATACCAATGCCACCACCACACAACTGGTCAATAT
CAATAGCGACGACTGGGACGAGTCGCTACTGGCGTGGAGCGGGGCCAACAAAGCCTGGTTTGGTCGCCCGACGCATCCGG
GTAATGTCATTGGGCACTGGATTTGCCCGCAGGGTAATGAGATTCCGGTGGTCGCCGTTGCCAGCCATGATACCGCCAGC
GCGGTTATCGCCTCGCCGTTAAACGGTTCACGCGCTGCTTATCTCTCTTCTGGCACCTGGTCATTGATGGGCTTCGAAAG
CCAGACGCCATTTACCAATGACACGGCGCTGGCAGCCAACATAACCAATGAAGGCGGGGCGGAAGGTCGCTATCGGGTGC
TGAAAAATATTATGGGCTTATGGCTGCTTCAGCGAGTGCTTCAGGAGCGGCAAATCAACGATCTCCCGGCGCTTATCGCC
GCGACACAGGCACTTCCGGCCTGCCGCTTCATCATCAATCCCAATGACGATCGCTTTATTAATCCTGAGGCGATGTGCAG
CGAAATTCAGGCTGCGTGTCGGGAAACGGCGCAACCGATCCCGGAAAGTGATGCTGAACTGGCGCAGCTACGCGGTGAAG
ATTTCTCGCAACTGCATATTGTCGGCGGCGGCTGCCAGAACACGCTGCTCAACCAGCTATGTGCCGATGCCTGCGGTATT
CGGGTGATCGCCGGGCCTGTTGAAGCCTCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAA
TGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCC
ACTATGTGGCGCAGCTTCACTCTACACGACAGACAAAGGAGCTTTGCGCATGA

Upstream 100 bases:

>100_bases
TCCCTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCACGAATTCAGGCGCTTTTTAGACTGGTCGTAATG
AAATTCAGCAGGATCACATT

Downstream 100 bases:

>100_bases
CCACTCAACTGGAACAGGCCTGGGAGCTGGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGGCGCTGCGC
CAACTTGATCGTTTACCCGT

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWNVDSLESAIRLGLNKVCEEGIRIDSIGID
TWGVDFVLLDQQGQRVGLPVAYRDSRSNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIA
ATQALPACRFIINPNDDRFINPEAMCSEIQAACRETAQPIPESDAELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGI
RVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQLHSTRQTKELCA

Sequences:

>Translated_470_residues
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWNVDSLESAIRLGLNKVCEEGIRIDSIGID
TWGVDFVLLDQQGQRVGLPVAYRDSRSNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIA
ATQALPACRFIINPNDDRFINPEAMCSEIQAACRETAQPIPESDAELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGI
RVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQLHSTRQTKELCA
>Mature_469_residues
TFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWNVDSLESAIRLGLNKVCEEGIRIDSIGIDT
WGVDFVLLDQQGQRVGLPVAYRDSRSNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMP
DYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASA
VIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAA
TQALPACRFIINPNDDRFINPEAMCSEIQAACRETAQPIPESDAELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIR
VIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQLHSTRQTKELCA

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=489, Percent_Identity=94.8875255623722, Blast_Score=954, Evalue=0.0,
Organism=Escherichia coli, GI1789168, Length=408, Percent_Identity=24.2647058823529, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 51892; Mature: 51761

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWNVDSLESAI
CCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHH
RLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRSNGLMAQAQQQLGK
HHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEECCEEEECCCCCCCHHHHHHHHHHH
RDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNAT
HHHHHHCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCC
TTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
EEEEEECCCCCCCCHHHEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCC
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGL
HHEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLQERQINDLPALIAATQALPACRFIINPNDDRFINPEAMCSEIQAACRETAQPI
HHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHCCCC
PESDAELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRVIAGPVEASTLGNIGIQLM
CCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCHHCCCCEEEE
TLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQLHSTRQTKELCA
EHHHCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWNVDSLESAI
CCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHH
RLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRSNGLMAQAQQQLGK
HHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEECCEEEECCCCCCCHHHHHHHHHHH
RDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNAT
HHHHHHCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCC
TTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
EEEEEECCCCCCCCHHHEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCC
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGL
HHEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLQERQINDLPALIAATQALPACRFIINPNDDRFINPEAMCSEIQAACRETAQPI
HHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHCCCC
PESDAELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRVIAGPVEASTLGNIGIQLM
CCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCHHCCCCEEEE
TLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQLHSTRQTKELCA
EHHHCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA