| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is 82546011
Identifier: 82546011
GI number: 82546011
Start: 3666293
End: 3667102
Strand: Direct
Name: 82546011
Synonym: SBO_3650
Alternate gene names: NA
Gene position: 3666293-3667102 (Clockwise)
Preceding gene: 82546010
Following gene: 82546012
Centisome position: 81.12
GC content: 53.58
Gene sequence:
>810_bases ATGACTATCGAAAAAAGCCGATTCAGTTCGGGGGCCGCCCCGCAACCCAACGTTAACACGGGAGTAATTAACGGCAACGA CTTTGCCGCTATTGTTCCCGTTATTGCCGGACGCATTGGCGGGCGTGAAGCCAATATTGTGAGCGCTAAGGCGTTGCATA AAGCGCTGGGGGTGGGCCGCGACTTTACTAACTGGATTAAAGGCCGAATTGACCAGTACGGTTTTATTGCCGGAACCGAT TTTATCCGTGTTGAAAATTTGAGCACGCCAAAACGGGCGAGCGCAAAAACTCGCCAGCAAATAGAGCATGATTACCTGCT ATCGCTGGATATGGCTAAAGAAGTGGCAATGGTTGAACGCAACGAGCAGGGCCGCGCTATCCGCCGTTATTTCATCCAGT GCGAGGAAGAATTACAGCGTAGCGTGCCTGAAATCGCCGCCCGCTATCGTCGCCAGCTAAAAGCCCGTCTCAGTGCCGCA AACAACTTTAAGCCAATGTGCGATGCGCTGAATATGGCCCGTGCCGAGATGGGCAAAACGACGCAGCAGCGCCACTACAG CAACGAGAGCAACATGATCGCCCGTATCGTGCTGGGTGGCATGACGGCGAAGCAGTGGGCGCAGGCAAATGGCATTACTG GCGAACCACGGGACAGCATGAACGCAGCACAGCTTGAACACCTCGCCTATCTCGAAAGCACCAATATCACGTTAATTGAT ATGGGCATGGAATATGAGCAGCGCAAAGGAGAACTCACCCGCCTGTCGCAACGCTGGCTCGCTAAACGTCTGGAGGTAAA CCATGCGTAA
Upstream 100 bases:
>100_bases GCCGACGCTGGCGGCTATCAGGGACTTTCTCAGCCTGAAATTGCCGACATTCTCAATCTATACCCGGACAATCTCACCGC CGCATAACGGAGCCGAAAAT
Downstream 100 bases:
>100_bases CCTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTCCAATGAAA AAAAGAAATTTTAGCGCAGA
Product: anti-repressor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MTIEKSRFSSGAAPQPNVNTGVINGNDFAAIVPVIAGRIGGREANIVSAKALHKALGVGRDFTNWIKGRIDQYGFIAGTD FIRVENLSTPKRASAKTRQQIEHDYLLSLDMAKEVAMVERNEQGRAIRRYFIQCEEELQRSVPEIAARYRRQLKARLSAA NNFKPMCDALNMARAEMGKTTQQRHYSNESNMIARIVLGGMTAKQWAQANGITGEPRDSMNAAQLEHLAYLESTNITLID MGMEYEQRKGELTRLSQRWLAKRLEVNHA
Sequences:
>Translated_269_residues MTIEKSRFSSGAAPQPNVNTGVINGNDFAAIVPVIAGRIGGREANIVSAKALHKALGVGRDFTNWIKGRIDQYGFIAGTD FIRVENLSTPKRASAKTRQQIEHDYLLSLDMAKEVAMVERNEQGRAIRRYFIQCEEELQRSVPEIAARYRRQLKARLSAA NNFKPMCDALNMARAEMGKTTQQRHYSNESNMIARIVLGGMTAKQWAQANGITGEPRDSMNAAQLEHLAYLESTNITLID MGMEYEQRKGELTRLSQRWLAKRLEVNHA >Mature_268_residues TIEKSRFSSGAAPQPNVNTGVINGNDFAAIVPVIAGRIGGREANIVSAKALHKALGVGRDFTNWIKGRIDQYGFIAGTDF IRVENLSTPKRASAKTRQQIEHDYLLSLDMAKEVAMVERNEQGRAIRRYFIQCEEELQRSVPEIAARYRRQLKARLSAAN NFKPMCDALNMARAEMGKTTQQRHYSNESNMIARIVLGGMTAKQWAQANGITGEPRDSMNAAQLEHLAYLESTNITLIDM GMEYEQRKGELTRLSQRWLAKRLEVNHA
Specific function: Unknown
COG id: COG3561
COG function: function code K; Phage anti-repressor protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013557 - InterPro: IPR018876 [H]
Pfam domain/function: PF08346 AntA; PF10548 P22_AR_C [H]
EC number: NA
Molecular weight: Translated: 30197; Mature: 30066
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIEKSRFSSGAAPQPNVNTGVINGNDFAAIVPVIAGRIGGREANIVSAKALHKALGVGR CCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC DFTNWIKGRIDQYGFIAGTDFIRVENLSTPKRASAKTRQQIEHDYLLSLDMAKEVAMVER HHHHHHHHHHHCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NEQGRAIRRYFIQCEEELQRSVPEIAARYRRQLKARLSAANNFKPMCDALNMARAEMGKT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH TQQRHYSNESNMIARIVLGGMTAKQWAQANGITGEPRDSMNAAQLEHLAYLESTNITLID HHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE MGMEYEQRKGELTRLSQRWLAKRLEVNHA CCCCHHHHCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TIEKSRFSSGAAPQPNVNTGVINGNDFAAIVPVIAGRIGGREANIVSAKALHKALGVGR CCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC DFTNWIKGRIDQYGFIAGTDFIRVENLSTPKRASAKTRQQIEHDYLLSLDMAKEVAMVER HHHHHHHHHHHCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NEQGRAIRRYFIQCEEELQRSVPEIAARYRRQLKARLSAANNFKPMCDALNMARAEMGKT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH TQQRHYSNESNMIARIVLGGMTAKQWAQANGITGEPRDSMNAAQLEHLAYLESTNITLID HHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE MGMEYEQRKGELTRLSQRWLAKRLEVNHA CCCCHHHHCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]