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The map label for this gene is yhjC [H]

Identifier: 82545885

GI number: 82545885

Start: 3517908

End: 3518879

Strand: Direct

Name: yhjC [H]

Synonym: SBO_3520

Alternate gene names: 82545885

Gene position: 3517908-3518879 (Clockwise)

Preceding gene: 82545883

Following gene: 82545886

Centisome position: 77.83

GC content: 52.16

Gene sequence:

>972_bases
ATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGAACAACAATCGGTCAAAGAAATGGATAA
AATTCACGCAATGCAGTTGTTCATCAAAGTCGCGGAGCTGGAAAGTTTTTCCCGCGCAGCGGATTTCTTTGCTTTGCCAA
AGGGAAGTGTTTCGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTC
AAACTCACGCCAGAAGGCATGACCTATTATCAACGGGCAAAAGATGTGTTGAGTAATCTCAACGAACTGGACGGTCTGTT
TCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGCCAGGAATCGCGAAAAACCTGTTACTGCCGC
GCCTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTGAGTAGCCATGACCGTCCGGTAGATATTCTTCAT
GATGGTTTTGATTGCGTGATACGCACTGGCGCGTTACCGGAAGATGGCGTTATCGCCCGTCCCCTCGGCAAACTGACCAT
GGTCAACTGTGCCAGTCCGCACTATCTGACGCGCTTTGGTTATCCGCAAAGCCCCGATGATCTGACTTCACACGCAATAG
TGCGTTATACACCGCACCTGGGTGTACATCCGTTAGGTTTTGAGGTTGCCAGCGTTAATGGCGTCCAGTGGTTTAAGTCT
GGCGGCATGTTGACGGTAAATAGTAGCGAAAACTATCTCGCCGCCGGTCTTGCCGGTCTGGGGATTATTCAGATCCCGCG
CATTGCCGTGCGCGAAGCCCTGCGTGCCGGGCGGCTTATTGAAGTATTACCTGGCTACCGTGCCGAGCCGCTCTCCCTTT
CGCTGGTTTACCCGCAGCGTCGGGAGCTTTCCCGGCGTGTAAACCTGTTTATGCAGTGGCTGGCTGGCGTAATGAAAGAG
CACCTGGACTGA

Upstream 100 bases:

>100_bases
CTGTTTAAGGGGATTCACCTTTCTCATAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGTCATGACAAC
ATTGTGAAACCCGGCATTAG

Downstream 100 bases:

>100_bases
CCGACTATACTTTTTAAGAATGACCACGACAGAAGGACAAAAGAGCGGATGACGCAGGAAAACGAGATCAAACGTCCCAC
CCAGGATCTGGAGCACGAGC

Product: transcriptional regulator LYSR-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD

Sequences:

>Translated_323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD
>Mature_323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=98.6622073578595, Blast_Score=606, Evalue=1e-175,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=31.1036789297659, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=29.3515358361775, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.7671232876712, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=28.3687943262411, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=29.4314381270903, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=28.0936454849498, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1789173, Length=301, Percent_Identity=27.2425249169435, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786448, Length=282, Percent_Identity=25.531914893617, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=31.6091954022989, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790399, Length=312, Percent_Identity=27.2435897435897, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI157672245, Length=219, Percent_Identity=27.3972602739726, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36092; Mature: 36092

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPPGIAKNLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIAR
ECCCCHHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHCCHHHEEECCCCCCCCEEEC
PLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
CCCCEEEEECCCCCHHHHCCCCCCCHHHHHCEEEEECCCCCCCCCCEEEEECCCCHHCCC
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCCHHHHHHCCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEHLD
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPPGIAKNLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIAR
ECCCCHHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHCCHHHEEECCCCCCCCEEEC
PLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
CCCCEEEEECCCCCHHHHCCCCCCCHHHHHCEEEEECCCCCCCCCCEEEEECCCCHHCCC
GGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCCHHHHHHCCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEHLD
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]