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The map label for this gene is nikC [H]

Identifier: 82545841

GI number: 82545841

Start: 3465559

End: 3466392

Strand: Direct

Name: nikC [H]

Synonym: SBO_3475

Alternate gene names: 82545841

Gene position: 3465559-3466392 (Clockwise)

Preceding gene: 82545840

Following gene: 82545842

Centisome position: 76.67

GC content: 60.67

Gene sequence:

>834_bases
GTGAACTTTTTCCTCTCTTCCCGCTGGTCGGTACGCCTGGCGCTGATCATTATCGCCCTGCTGGCGCTGATTGCGCTCAC
CAGCCAGTGGTGGCTGCCGTATGACCCCCAGGCGATTGATTTGCCGTCGCACCTGCTTTCGCCGGATGCGCAGCACTGGC
TGGGCACCGATCACTTAGGTCGCGATATTTTCTCGCGGCTGATGGCAGCGACCCGCGTGTCGCTCGGTTCGGTAATGGCC
TGCCTGCTGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCAC
CATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGC
TGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGCAGCCTGGTGATTTCACTA
CGCCAACGCGAGTTTGTGCTGGCGTCACGGCTTTCCGGTGCGGGCCATGTGCGAGTGTTTGTCGATCATCTGGCAGGCGC
GGTGATCCCTTCGCTGCTGGTGCTGGCAACGCTGGATATCGGCCATATGATGCTGCACGTCTCGGGGATGTCTTTCCTTG
GCCTCGGTGTGACCGCGCCGACCGCCGAATGGGGCGTGATGATTAACGACGCGCGCCAGTATATCTGGACCCAGCCGCTG
CAAATGTTCTGGCCGGGGCTGGCGCTGTTTATCAGCGTGATGGCCTTTAACCTGGTGGGTGACGCACTGCGCGATCATCT
GGACCCTCATCTGGTGACGGAGCACGCACACTAA

Upstream 100 bases:

>100_bases
CGCTGATGATGGTGGTGGTTTTTGTGGTCTGTAATTTGATTGTCGATTTGCTCAACGCCGCGCTGGACCCGCGCATTCGT
CGTCATGAAGGAGCGCACGC

Downstream 100 bases:

>100_bases
TGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCAA
CGCGGGCGCGTGCTGGCGTT

Product: nickel transporter permease NikC

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSHLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMA
CLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL
RQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVTAPTAEWGVMINDARQYIWTQPL
QMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH

Sequences:

>Translated_277_residues
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSHLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMA
CLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL
RQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVTAPTAEWGVMINDARQYIWTQPL
QMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH
>Mature_277_residues
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSHLLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMA
CLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL
RQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVTAPTAEWGVMINDARQYIWTQPL
QMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH

Specific function: Involved in a nickel transport system, probably translocates nickel through the bacterial inner membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789889, Length=277, Percent_Identity=99.2779783393502, Blast_Score=541, Evalue=1e-155,
Organism=Escherichia coli, GI1787054, Length=259, Percent_Identity=37.8378378378378, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1787760, Length=255, Percent_Identity=36.078431372549, Blast_Score=181, Evalue=3e-47,
Organism=Escherichia coli, GI1789964, Length=257, Percent_Identity=37.3540856031128, Blast_Score=147, Evalue=5e-37,
Organism=Escherichia coli, GI1787498, Length=259, Percent_Identity=30.8880308880309, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787549, Length=264, Percent_Identity=29.5454545454545, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=23.3480176211454, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515
- InterPro:   IPR014157 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30359; Mature: 30359

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSHLLSPDAQHWLGTDHLG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHCCCHHHH
RDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVTAPTAEWGVMINDARQYIWTQPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHEEHHHHHHHHHCCH
QMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC
>Mature Secondary Structure
MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSHLLSPDAQHWLGTDHLG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHCCCHHHH
RDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADMFMTFPTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVTAPTAEWGVMINDARQYIWTQPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHEEHHHHHHHHHCCH
QMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHAH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]