| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is 82545786
Identifier: 82545786
GI number: 82545786
Start: 3407743
End: 3408510
Strand: Reverse
Name: 82545786
Synonym: SBO_3418
Alternate gene names: NA
Gene position: 3408510-3407743 (Counterclockwise)
Preceding gene: 82545787
Following gene: 82545785
Centisome position: 75.41
GC content: 45.44
Gene sequence:
>768_bases ATGCAACCCAGCCCCGCCATGCAGGCATTAATTGAGCAGATTTATCACACCTTTCGTCGTTATCGGGTGCCGCAGAAATT TGTGGTTTGTTGTGAATATTGCCTGAGTCAGCAGGAACAAAAGGCATTACGGAGTACATCGTTACGAGCGATCCCGTATT CCTTAATCAATGCCTGGAATAGTAGCCCAGGGCCTGATCCGCAAAATAGCGATGAGGTCCGCTATTTTCTGCCGCGTTTA CTGGAATTTGTTGCACAGGGGCATTTTGACAATATTCACGTAGTTTTTTCTCTGCGCCGTATCAACCTTGCCAACAAAGA AAACTGGCGTGCGGATGAACGGGCAATTTTACAGCGATTTGCCTGCCAGTATATGACTGATTGGGTATCCGGCGATGAAG CTGTCGAATTACAGTATATGCTGGAAATGTTTTTCCGTGCCGATATCGCTCTTGCGCCATTGCTGGATGCCATTAATTCA GTTCCCGGCTTTTGGTCGACCGTTTCTCTTGCCTGTTTATTGAACAGATATTGTGAGGATTATATCAGAGATAACCAGGA CGATATCGATAACGTCATTACCACCCAAATCAATGCCTGGGCTAGAAATAATCATCCTTTACTGAAAGAAAGAGCGCGGC AAGCGATTGAGAACCCGCTAAAACAGCCCGAACCAATGACAGAATATCAGGTCTGGGAAGATGACTGGATAATTGATGAG TGTTTATGCGCGATGTATGACGCATCATCCGAATCACTAGGAAAATAA
Upstream 100 bases:
>100_bases GCTTTTCCCTTTCGCGTAGCGCCCTTATTCGCCTGAACGCGGCGAATGCTCGTTTTGTCTATCAACCGTTTACACGCGAT CAGCGGGCGAGGGGGTAACT
Downstream 100 bases:
>100_bases AAATGATTAGATTCCGGCTTTATATTCCCCCTGTAATTCTCGGTTTTGTTATCGTGCCATTATTGGTATGGCCGACGGTT ATTGTCTTAGCCGTACTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALRSTSLRAIPYSLINAWNSSPGPDPQNSDEVRYFLPRL LEFVAQGHFDNIHVVFSLRRINLANKENWRADERAILQRFACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINS VPGFWSTVSLACLLNRYCEDYIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIENPLKQPEPMTEYQVWEDDWIIDE CLCAMYDASSESLGK
Sequences:
>Translated_255_residues MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALRSTSLRAIPYSLINAWNSSPGPDPQNSDEVRYFLPRL LEFVAQGHFDNIHVVFSLRRINLANKENWRADERAILQRFACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINS VPGFWSTVSLACLLNRYCEDYIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIENPLKQPEPMTEYQVWEDDWIIDE CLCAMYDASSESLGK >Mature_255_residues MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALRSTSLRAIPYSLINAWNSSPGPDPQNSDEVRYFLPRL LEFVAQGHFDNIHVVFSLRRINLANKENWRADERAILQRFACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINS VPGFWSTVSLACLLNRYCEDYIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIENPLKQPEPMTEYQVWEDDWIIDE CLCAMYDASSESLGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29756; Mature: 29756
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALRSTSLRAIPYSLINAWN CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC SSPGPDPQNSDEVRYFLPRLLEFVAQGHFDNIHVVFSLRRINLANKENWRADERAILQRF CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHH ACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINSVPGFWSTVSLACLLNRYCED HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH YIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIENPLKQPEPMTEYQVWEDDWIIDE HHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHH CLCAMYDASSESLGK HHHHHHCCCHHCCCC >Mature Secondary Structure MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALRSTSLRAIPYSLINAWN CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC SSPGPDPQNSDEVRYFLPRLLEFVAQGHFDNIHVVFSLRRINLANKENWRADERAILQRF CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHH ACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINSVPGFWSTVSLACLLNRYCED HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH YIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIENPLKQPEPMTEYQVWEDDWIIDE HHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHH CLCAMYDASSESLGK HHHHHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA