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The map label for this gene is yrfA [H]

Identifier: 82545747

GI number: 82545747

Start: 3362640

End: 3363083

Strand: Reverse

Name: yrfA [H]

Synonym: SBO_3379

Alternate gene names: 82545747

Gene position: 3363083-3362640 (Counterclockwise)

Preceding gene: 82545748

Following gene: 82545746

Centisome position: 74.41

GC content: 52.25

Gene sequence:

>444_bases
GTGATGATCTTTTGTTCACGCTACAACTGGAGACGCCGCATGAGGGTTAAACGCTGGTTGTTGGCAGGTATTGCATTGTG
CCTTTTAACCGGTATGCGTGACCCTTTTAAACCGCCGGAAGATCTATGCCGGATTAGCGAACTTAGCCAGTGGCGCTATC
AGGGGATGGTAGGGCGAGGCGAGCGCATCATCGGTGTAATAAAAGACGGGCAAAAGAAATGGCGACGGGTGCAGCAAAAC
GATGTGCTGGAAAACGGCTGGACAATTTTACAGCTGACGCCAGACGTACTAACGCTGGGTACCGGGACAAACTGCGAACC
GCCACAATGGTTGTGGCAACGGCAAGGAGATACAAATGAAGCAATGGATAGCCGCACTACTGTTGATGCTGATACCCGGC
GTACAGGCGGCAAAGCCGCAAAAAGTGACGCTGATGGTGGATGA

Upstream 100 bases:

>100_bases
GAGTTGGCGTTGAAAACGCTGTGGGAAGCAGTGCCGTCGGCATTCACACGGCTGGCAGAGCGCAACGTCAGCGTGAGCCG
TTTTTCGTTAAGCGTGGAAG

Downstream 100 bases:

>100_bases
CGTTCCGGTAGCTCAGGTGTTGCAGGCGCTGGCTGAACAGGAGAAGTTGAACCTGGTCGTGTCGCCAGACGTCAGCGGTA
CGGTGTCGTTACATCTAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MMIFCSRYNWRRRMRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQN
DVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG

Sequences:

>Translated_147_residues
MMIFCSRYNWRRRMRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQN
DVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG
>Mature_147_residues
MMIFCSRYNWRRRMRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQN
DVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082256, Length=134, Percent_Identity=100, Blast_Score=271, Evalue=1e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019684 [H]

Pfam domain/function: PF10748 DUF2531 [H]

EC number: NA

Molecular weight: Translated: 16900; Mature: 16900

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIFCSRYNWRRRMRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRG
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
ERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNE
CEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCHHHHHHCCCCCCH
AMDSRTTVDADTRRTGGKAAKSDADGG
HHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMIFCSRYNWRRRMRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRG
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
ERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNE
CEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCHHHHHHCCCCCCH
AMDSRTTVDADTRRTGGKAAKSDADGG
HHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]