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The map label for this gene is yrdA [H]

Identifier: 82545642

GI number: 82545642

Start: 3277374

End: 3278072

Strand: Direct

Name: yrdA [H]

Synonym: SBO_3273

Alternate gene names: 82545642

Gene position: 3277374-3278072 (Clockwise)

Preceding gene: 82545641

Following gene: 82545649

Centisome position: 72.51

GC content: 46.35

Gene sequence:

>699_bases
TTGATCTTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACTAAA
AGACTTGCACAAGGCCAATAATGCCCCCAAAGTCATTAGTAAATCATTTATTGCTGAGGTAAGTATGTCTGATGTTTTAC
GCCCATACCGCGATCTTTTTCCACAAATCGGTCAGCGCGTAATGATCGACGATAGCAGTGTCGTGATTGGTGGCGTTCGT
CTGGCTGATGATGTGGGGATCTGGCCGCTCGTTGTGATTCGTGGAGATGTACATTATGTACAGATCGGAGCACGCACCAA
TATCCAGGATGGCAGTATGTTGCATGTCACTCATAAATCCTCGTACAACCCAGATGGCAACCCATTAACCATTGGCGAAG
ATGTCACTGTTGGTCACAAGGTGATGCTCCACGGCTGCACCATTGGCAATCGAGTTTTGGTTGGGATGGGCTCAATTTTA
CTTGATGGCGCAATAGTAGAAGATGATGTGATGATTGGTGCGGGTAGTCTGGTCCCACAAAATAAACGGCTGGAGAGCGG
ATATCTGTATCTCGGTAGCCCCGTCAAACAGATCCGCCCGTTAAGTGATGAAGAGAAGGCTGGGTTACGCTATTCCGCGA
ATAATTACGTGAAATGGAAGGACGAATATCTGGATCAGGGTAACCAGACCCAGCCTTGA

Upstream 100 bases:

>100_bases
TTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTTAACGGAGGCGCATTATAGGGATCCCAA
TATTTTGCACAAGTATTTTT

Downstream 100 bases:

>100_bases
TCATCTTCACTTTGTTCCTGAATTAAGTTTTCCGCTTCTTCTTCCAGGTCCCAGCGATGCTGACGAAAACTCGCTAACCA
CTGTTCTGGCGTATCTCCAG

Product: transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MIFFSVCCFFTLFAAIAHKTVLFCILKDLHKANNAPKVISKSFIAEVSMSDVLRPYRDLFPQIGQRVMIDDSSVVIGGVR
LADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSIL
LDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGNQTQP

Sequences:

>Translated_232_residues
MIFFSVCCFFTLFAAIAHKTVLFCILKDLHKANNAPKVISKSFIAEVSMSDVLRPYRDLFPQIGQRVMIDDSSVVIGGVR
LADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSIL
LDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGNQTQP
>Mature_232_residues
MIFFSVCCFFTLFAAIAHKTVLFCILKDLHKANNAPKVISKSFIAEVSMSDVLRPYRDLFPQIGQRVMIDDSSVVIGGVR
LADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSIL
LDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGNQTQP

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=184, Percent_Identity=99.4565217391304, Blast_Score=374, Evalue=1e-105,
Organism=Escherichia coli, GI1787667, Length=158, Percent_Identity=31.6455696202532, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081681, Length=177, Percent_Identity=31.638418079096, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25535; Mature: 25535

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFFSVCCFFTLFAAIAHKTVLFCILKDLHKANNAPKVISKSFIAEVSMSDVLRPYRDLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
PQIGQRVMIDDSSVVIGGVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKS
HHHCCEEEEECCCEEEEEEEEECCCCCEEEEEEECCEEEEEECCCCCCCCCCEEEEEECC
SYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQ
CCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEEECCHHHHCCEEEECCEEEECCCCCCC
NKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGNQTQP
CCCCCCCEEEECCCHHHHCCCCCCHHCCEEECCCCEEEECHHHHCCCCCCCC
>Mature Secondary Structure
MIFFSVCCFFTLFAAIAHKTVLFCILKDLHKANNAPKVISKSFIAEVSMSDVLRPYRDLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
PQIGQRVMIDDSSVVIGGVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKS
HHHCCEEEEECCCEEEEEEEEECCCCCEEEEEEECCEEEEEECCCCCCCCCCEEEEEECC
SYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQ
CCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEEECCHHHHCCEEEECCEEEECCCCCCC
NKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGNQTQP
CCCCCCCEEEECCCHHHHCCCCCCHHCCEEECCCCEEEECHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]