Click here to switch to the map view.

The map label for this gene is yhdW [H]

Identifier: 82545639

GI number: 82545639

Start: 3267384

End: 3268349

Strand: Direct

Name: yhdW [H]

Synonym: SBO_3262

Alternate gene names: 82545639

Gene position: 3267384-3268349 (Clockwise)

Preceding gene: 82545638

Following gene: 82545640

Centisome position: 72.29

GC content: 48.55

Gene sequence:

>966_bases
GTGCAATGCGGGATCAGTGATGGATTACTTGGGTTCTCTTATGCCGATGCAGACGGTAAGTTTTCAGGTATTGATGTTGA
TGTTGATGTTGATGTTGATGTTGATGTTGATGTTGATGTTGATGTTGATGTTTGTCGTAGTGTTGCCGCTGCTGTATTTG
GTGACGACACGAAAGTGAAATATACCCCACTCACAGCAAAAGAACGCTTCACGGCTTTACAGTCAGGGGAAGTGGATTTG
CTCTCCCGTAATACGACCTGGACTTCATCTCGCGACGCCGGGATGGGAATGGCATTTACTGGCGTCACTTATTACGACGG
CATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGG
GTACTGATACCGAACTCAACGTTGCCGACTATTTCAAGGCAAACAATATGAAGTACACACCGGTGACTTTCGATCGCTCT
GACGAATCAGCGAAGGCACTGGAATCTGGTCGCTGCGATACGCTGGCCTCGGATCAGTCGCAACTGTATGCCCTGCGCAT
CAAATTAAGCAACCCAGCTGAATGGATTGTCTTACCGGAGGTTATCTCTAAAGAACCGCTTGGGCCGGTAGTTCGTCGTG
GCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGCTGAATGCTGAAGAGATGGGCATCAATTCCCAG
AACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGA
TCTGAAGTTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTCGAGCGTAACGTAG
GTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCGCCGCCCGTG
CGTTAA

Upstream 100 bases:

>100_bases
GATGATGATAGCCACACTGGCTGCCGCCAGCGTGCTGCTTGCCGTTGCAAATCAGGCGCATGCTGGCGCGACGCTTGATG
CCGTTCAGAAAAAAGGTTTT

Downstream 100 bases:

>100_bases
GTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGTCTCATCGCC
GCTCAACCGTTAAAGGCTCA

Product: periplasmic binding transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MQCGISDGLLGFSYADADGKFSGIDVDVDVDVDVDVDVDVDVDVCRSVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDL
LSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS
DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQ
NVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPV
R

Sequences:

>Translated_321_residues
MQCGISDGLLGFSYADADGKFSGIDVDVDVDVDVDVDVDVDVDVCRSVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDL
LSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS
DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQ
NVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPV
R
>Mature_321_residues
MQCGISDGLLGFSYADADGKFSGIDVDVDVDVDVDVDVDVDVDVCRSVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDL
LSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS
DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQ
NVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPV
R

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 35172; Mature: 35172

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCGISDGLLGFSYADADGKFSGIDVDVDVDVDVDVDVDVDVDVCRSVAAAVFGDDTKVK
CCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
YTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKS
EECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECEEEECCCCEEECCCHHHCH
AKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQS
HHHCCCEEEEEECCCCCCCCHHHHHCCCCEEECEEEECCCCHHHHHHHCCCCCCCCCCCC
QLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQ
EEEEEEEEECCCCCEEEEHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHCCCCC
NVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLK
CCCHHCCCCCCCHHHHHHCCCCCCCCCCEECCHHHHHHHHHHCCHHHHHHHCCCCCCCEE
IKRGQNNLWNNGGIQYAPPVR
EECCCCCCCCCCCEEECCCCC
>Mature Secondary Structure
MQCGISDGLLGFSYADADGKFSGIDVDVDVDVDVDVDVDVDVDVCRSVAAAVFGDDTKVK
CCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
YTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKS
EECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECEEEECCCCEEECCCHHHCH
AKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQS
HHHCCCEEEEEECCCCCCCCHHHHHCCCCEEECEEEECCCCHHHHHHHCCCCCCCCCCCC
QLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQ
EEEEEEEEECCCCCEEEEHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHCCCCC
NVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLK
CCCHHCCCCCCCHHHHHHCCCCCCCCCCEECCHHHHHHHHHHCCHHHHHHHCCCCCCCEE
IKRGQNNLWNNGGIQYAPPVR
EECCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]