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The map label for this gene is rbsB [H]

Identifier: 82545508

GI number: 82545508

Start: 3128857

End: 3129501

Strand: Direct

Name: rbsB [H]

Synonym: SBO_3125

Alternate gene names: 82545508

Gene position: 3128857-3129501 (Clockwise)

Preceding gene: 82545507

Following gene: 82545509

Centisome position: 69.23

GC content: 48.22

Gene sequence:

>645_bases
GTGGATGCCATTATTATCTCTCCGGTCGATTCGAAAGGCGTCCAGGCGGCGATAATTAAAGCCGATAAGGCCGGTATTCC
CGTTATCACCGTCGACGTCGCTGCGGAAGGCGTTCCGGTCGTATCGCATGTTGCGACCGATAACTATGCGGGAGGCGTTG
AAGCAGGCAAGTTAATGGGCAAACTTTTGAATGGTAAAGGTACTGTAGCCATTATTTCTTATCCGGCACTACAATCGGTG
GTTGCGCGCGTTGATGGTTTTAAGAAAGGGTTAAGCGATACACCGGATATTAAAATTGTTGCTGAACAGCCTAGTATTAC
GCGGGCTGAAGCGTTAACGACTGCGCAAAACATTATGCAGGCAAATGCCAACCTGAATGGTCTGTTTGGCTTTGGTGATG
ATGCGGCGCTGGCAGCGGTTATCGCAGCAAAATCTGCGCATAACGACAACATCAAAATCATTGGTTTTGATGGCATGAAA
GAAGCGCGTGATGCCGTTGACAGTGAAAAAACGTTTGCGGCCGTGATTCGGCAATATCCCGATCAAATGGGTGCTAAAGC
CATTGATGCCGCTGTTGATCACCTCAATGGTAAACCGGTAGAAAAAATGATCCCGGTACAACCCGGCGTTTATACAGGTA
AATAG

Upstream 100 bases:

>100_bases
CATAAAACACTATCAGTAAGTTGGAGTCATTACCTCTCTATTTGCCAATCAGGATTTAAACAAACAACTTTCTGATGTTG
AGGATTTTATTACTAAAAAA

Downstream 100 bases:

>100_bases
TAAACATCTTCACCTCACAACAAAACGTTATTGGCGTTTTGTTGTGACACCGAGGTCATTATGACGGATGTTATTCTTGA
TGTTTCGCATATTGCGAAGA

Product: ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLNGKGTVAIISYPALQSV
VARVDGFKKGLSDTPDIKIVAEQPSITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGFDGMK
EARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK

Sequences:

>Translated_214_residues
MDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLNGKGTVAIISYPALQSV
VARVDGFKKGLSDTPDIKIVAEQPSITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGFDGMK
EARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK
>Mature_214_residues
MDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLNGKGTVAIISYPALQSV
VARVDGFKKGLSDTPDIKIVAEQPSITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGFDGMK
EARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=205, Percent_Identity=33.6585365853659, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1790526, Length=201, Percent_Identity=30.3482587064677, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 22120; Mature: 22120

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMG
CCEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHH
KLLNGKGTVAIISYPALQSVVARVDGFKKGLSDTPDIKIVAEQPSITRAEALTTAQNIMQ
HHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
ANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGFDGMKEARDAVDSEKTFAAVIRQYP
HCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHH
DQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK
HHHCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMG
CCEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHH
KLLNGKGTVAIISYPALQSVVARVDGFKKGLSDTPDIKIVAEQPSITRAEALTTAQNIMQ
HHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
ANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGFDGMKEARDAVDSEKTFAAVIRQYP
HCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHH
DQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK
HHHCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]