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The map label for this gene is ygeR [H]

Identifier: 82545505

GI number: 82545505

Start: 3125956

End: 3126735

Strand: Direct

Name: ygeR [H]

Synonym: SBO_3121

Alternate gene names: 82545505

Gene position: 3125956-3126735 (Clockwise)

Preceding gene: 161984857

Following gene: 82545507

Centisome position: 69.16

GC content: 50.26

Gene sequence:

>780_bases
TTGTTTTTTAAGCGAGGAAAGATTTTGAGTGCGGGACGCCTGAATAAAAAATCTCTGGGTATCGTGATGTTGTTATCGGT
TGGACTGCTTTTGGCGGGCTGTTCGGGTAGCAAATCATCCGATACAGGAACATATTCCGGCTCCGTTTACACCGTGAAAC
GGGGGGATACGCTATATCGTATTTCGCGCACCACGGGAACCAGCGTAAAAGAACTGGCGCGACTGAACGGCATTTCCCCC
CCTTACACCATTGAAGTTGGTCAGAAACTAAAACTGGGTGGGGCGAAAAGTAGCAGTAGTACACGTAAATCAACCGCCAA
ATCAACGACCAAAACCGCATCGGTTACACCGTCATCAGCGGTACCGAAATCTTCCTGGCCGCCAGTAGGGCAACGTTGTT
GGTTATGGCCAACGACAGGGAAAGTTATCATGCCGTATTCGACAGCAGATGGCGGCAATAAAGGGATTGATATCTCAGCT
CCACGGGGTACACCTATTTACGCCGCGGGTGCAGGAAAGGTGGTGTATGTGGGCAACCAGCTGCGTGGCTACGGTAATCT
CATCATGATTAAACACAGTGAAGATTACATTACGGCTTACGCCCATAATGACACGATGCTGGTAAATAATGGGCAAAGCG
TGAAGACTGGGCAAAAAATCGCCACTATGGGGAGCACGGATGCGGCATCTGTTCGCCTGCATTTCCAGATTCGTTACCGT
GCAACGGCAATTGATCCGCTACGTTACTTGCCGCCGCAGGGCAGCAAGCCAAAATGCTGA

Upstream 100 bases:

>100_bases
CTTCCCTTTGCCAAATGAAATTAACCTCTTTCTCTATTACCACGTTTTTCCAGAAGCAAGAGATTGGGTATCAAGAGGCT
GGCTGCTATGATAAGGCGTC

Downstream 100 bases:

>100_bases
TGGCGAATTAATCAGCAGTCAGCAGCGCGGCACTTGCTAAGGAGAGCGTAAGGTTTATAATGCCTTACGCATCTCGAAGC
GGGCGTAGTTCAATGGTAGA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MFFKRGKILSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISP
PYTIEVGQKLKLGGAKSSSSTRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISA
PRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKTGQKIATMGSTDAASVRLHFQIRYR
ATAIDPLRYLPPQGSKPKC

Sequences:

>Translated_259_residues
MFFKRGKILSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISP
PYTIEVGQKLKLGGAKSSSSTRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISA
PRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKTGQKIATMGSTDAASVRLHFQIRYR
ATAIDPLRYLPPQGSKPKC
>Mature_259_residues
MFFKRGKILSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISP
PYTIEVGQKLKLGGAKSSSSTRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISA
PRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKTGQKIATMGSTDAASVRLHFQIRYR
ATAIDPLRYLPPQGSKPKC

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=251, Percent_Identity=98.804780876494, Blast_Score=500, Evalue=1e-143,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=63.5593220338983, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=32.2834645669291, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081989, Length=112, Percent_Identity=33.9285714285714, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 27559; Mature: 27559

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFKRGKILSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYR
CCCCCCCEEECCCCCCHHCCHHHHHHHHHHEECCCCCCCCCCCEECCEEEEEECCCEEEE
ISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTTKTASVTPSSA
EECCCCCCHHHHHHHCCCCCCEEEECCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCC
VPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQ
CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCE
LRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKTGQKIATMGSTDAASVRLHFQIRYR
ECCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEE
ATAIDPLRYLPPQGSKPKC
EEEECCHHHCCCCCCCCCC
>Mature Secondary Structure
MFFKRGKILSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYR
CCCCCCCEEECCCCCCHHCCHHHHHHHHHHEECCCCCCCCCCCEECCEEEEEECCCEEEE
ISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTTKTASVTPSSA
EECCCCCCHHHHHHHCCCCCCEEEECCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCC
VPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQ
CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEECCCEEEEECCE
LRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKTGQKIATMGSTDAASVRLHFQIRYR
ECCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCCEEEECCCCCCEEEEEEEEEEEE
ATAIDPLRYLPPQGSKPKC
EEEECCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]