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The map label for this gene is yggR [H]

Identifier: 82545426

GI number: 82545426

Start: 3038416

End: 3039441

Strand: Direct

Name: yggR [H]

Synonym: SBO_3039

Alternate gene names: 82545426

Gene position: 3038416-3039441 (Clockwise)

Preceding gene: 82545421

Following gene: 82545437

Centisome position: 67.22

GC content: 54.58

Gene sequence:

>1026_bases
GTGCCAGGTTATGCGCAATATCGTTCATTTTCCGAGGATCTTAGTATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAA
GCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACGATGGCGCATTCGCGGGCTAATGGAAGCTGCGCCGT
TTGATGCGCTGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATGACGATCAGCGGGCAATATTGCTGGAAAATGGCCAG
CTGGATTTTGCCGTGTCGCTGGCGGAAAACCAGCGATTGCGTGGCAGCGCATTCGCGCAACGGCATGGCATTTCGCTGGC
GTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGGCGCACCAACGGTATTGCCGGAATTACTCAAGAGCG
AGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAATCTACCACGCTGGCGGCGATGGTTGGCTATCTCAAT
CAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTTGAATATATCTATGCCAGCCAGCGATGTTTGATCCAGCA
GCGGGAAATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCGGGCCGCATTGCGGGAAGATCCTGATGTGATTTTGC
TCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCACTGACGGCGGCAGAAACCGGGCATTTGGTGCTAGCAACATTA
CATACGCGTGGTGCCGCGCAGGCAGTTGAGCGACTGGTGGATTCATTTCCGGCGCAGGAAAAAGATCCCGTACGTAATCA
ACTGGCAGGTAGTTTACGGGCCGTGTTGTCACAAAAGCTGGAAGTGGATAAACAGGAAGGACGCGTGGCGCTGTTTGAAT
TATTGATTAACACTCCCGCGGTGGGGAATTTGATTCGCGAAGGGAAAACCCACCAGTTACCGCATGTTATTCAAACCGGG
CAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGGGTGGGGGAAGGGCGTTTGTGA

Upstream 100 bases:

>100_bases
ATGGCGCTCGCAGGTTTTGTTTTACTGACTGCAAGCAGCGTAATTTCTTCTGGAGAACGGCCGCAACGCGTTGCAGCCGC
TGAGATTTTGTCCCGGACCT

Downstream 100 bases:

>100_bases
CGTTGCCATGCCCGATGCGCAAGTTTATAGGGCCTATAAAGGCAATAAATGTCTGATGCGACGCTAACGCGTCTTATCAG
ACCTACAGCCGCTGCCAGAT

Product: protein transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDALDVEELLREWLDDDQRAILLENGQ
LDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLN
QHADAHILTLEDPVEYIYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTG
QQVGMITFQQSYQQRVGEGRL

Sequences:

>Translated_341_residues
MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDALDVEELLREWLDDDQRAILLENGQ
LDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLN
QHADAHILTLEDPVEYIYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTG
QQVGMITFQQSYQQRVGEGRL
>Mature_340_residues
PGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDALDVEELLREWLDDDQRAILLENGQL
DFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQ
HADAHILTLEDPVEYIYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLH
TRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQ
QVGMITFQQSYQQRVGEGRL

Specific function: Unknown

COG id: COG2805

COG function: function code NU; Tfp pilus assembly protein, pilus retraction ATPase PilT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI87082188, Length=326, Percent_Identity=98.4662576687116, Blast_Score=650, Evalue=0.0,
Organism=Escherichia coli, GI1789723, Length=280, Percent_Identity=36.4285714285714, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786296, Length=272, Percent_Identity=36.3970588235294, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006321
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 37662; Mature: 37530

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDALDVE
CCCHHHHHHHHHHHCCCHHHHHEEHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHH
ELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQ
HHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHH
LGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYIYAS
CCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
QRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEE
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPA
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHCCCH
VGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL
HHHHHHCCCCCCCCHHHHCCCHHCEEHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDALDVE
CCHHHHHHHHHHHCCCHHHHHEEHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHH
ELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQ
HHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHH
LGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYIYAS
CCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
QRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEE
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPA
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHCCCH
VGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL
HHHHHHCCCCCCCCHHHHCCCHHCEEHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]