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The map label for this gene is yhaR [H]

Identifier: 82545371

GI number: 82545371

Start: 2981829

End: 2982281

Strand: Reverse

Name: yhaR [H]

Synonym: SBO_2978

Alternate gene names: 82545371

Gene position: 2982281-2981829 (Counterclockwise)

Preceding gene: 82545372

Following gene: 82545370

Centisome position: 65.98

GC content: 52.32

Gene sequence:

>453_bases
GTGAACAGCAACAGGATGTTATTTCACGTACTTTTACCCAGGCGCTCTGACGCCGGAGGATGTATGAAAAAGATTATCGA
AACGCAACGTGCCCCAGGCGCAATCGGCCCTTATGTTCAGGGCGTTGATTTAGGCAGCATGGTCTTCACCTCCGGGCAAA
TTCCGGTTTGCCCGCAGACCGGTGAGATCCCGGCTGATGTGCAAGATCAGGCGCGTTTAAGCCTCGAAAACGTCAAAGCG
ATCGTGGTTGCTGCCGGGCTGAGCGTGGGCGATATCATCAAGATGACCGTGTTCATCACCGATCTGAATGATTTTGCCAC
CATCAATGAAGTCTATAAGCAGTTCTTCGATGAGCATCAGGCGACCTACCCGACCCGGAGCTGTGTGCAGGTTGCGCGTT
TGCCGAAAGATGTGAAGCTGGAAATTGAAGCTATCGCAGTACGTAGTGCGTAA

Upstream 100 bases:

>100_bases
AATCGGGAAATGCTGCTGGATGCCATCGAGCACCCGGAAAAATATCCTAACCTGACAATCCGTGTCTCTGGCTACGCCGT
GCGCTTCAACGCACTGACCC

Downstream 100 bases:

>100_bases
AGCCTCGTGAGCGGGACGGTCGCAAGGTCGTTCCGCTCCACTTCACTGAACGGCAATCCGAGGGTGTGGATATGATTAGT
GCATTCGATATTTTCAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MNSNRMLFHVLLPRRSDAGGCMKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKA
IVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA

Sequences:

>Translated_150_residues
MNSNRMLFHVLLPRRSDAGGCMKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKA
IVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>Mature_150_residues
MNSNRMLFHVLLPRRSDAGGCMKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKA
IVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=128, Percent_Identity=41.40625, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI87082213, Length=129, Percent_Identity=100, Blast_Score=263, Evalue=3e-72,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=74.0157480314961, Blast_Score=200, Evalue=4e-53,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=29.6, Blast_Score=64, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=42.4, Blast_Score=112, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=42.4, Blast_Score=112, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=42.4, Blast_Score=112, Evalue=9e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=38.2113821138211, Blast_Score=97, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=38.8349514563107, Blast_Score=89, Evalue=3e-19,
Organism=Drosophila melanogaster, GI19921376, Length=127, Percent_Identity=41.7322834645669, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 16364; Mature: 16364

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNRMLFHVLLPRRSDAGGCMKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQT
CCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
GEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQ
CCCCCCCCHHHHHHHHHHEEEEEECCCCHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHC
ATYPTRSCVQVARLPKDVKLEIEAIAVRSA
CCCCHHHHHHHHHCCCCCEEEEEEEEEECC
>Mature Secondary Structure
MNSNRMLFHVLLPRRSDAGGCMKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQT
CCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
GEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQ
CCCCCCCCHHHHHHHHHHEEEEEECCCCHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHC
ATYPTRSCVQVARLPKDVKLEIEAIAVRSA
CCCCHHHHHHHHHCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]