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The map label for this gene is ygjN [H]

Identifier: 82545339

GI number: 82545339

Start: 2951368

End: 2951682

Strand: Reverse

Name: ygjN [H]

Synonym: SBO_2944

Alternate gene names: 82545339

Gene position: 2951682-2951368 (Counterclockwise)

Preceding gene: 82545340

Following gene: 82545338

Centisome position: 65.31

GC content: 38.1

Gene sequence:

>315_bases
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACATGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA

Upstream 100 bases:

>100_bases
TTTCTACGTTTATTCTTCCGTCACACAGATAAATTCATACGTTGCCAATCTGTCAACGGATGTTATCATATTGCCAATTT
GTCAACGGACGTGATGAAGA

Downstream 100 bases:

>100_bases
TTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCGGTGGTACCTTTTCTGGCGGGTATTCAGAACGAGGAA
CAATACACCCAGGCGCTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: Endoribonuclease HigB; Toxin HigB [H]

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MHLITQKALKDAAEKYPQHKTELVALGNMIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Sequences:

>Translated_104_residues
MHLITQKALKDAAEKYPQHKTELVALGNMIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK
>Mature_104_residues
MHLITQKALKDAAEKYPQHKTELVALGNMIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Specific function: Part of a toxin-antitoxin (TA) module. A probable translation-dependent mRNA interferase [H]

COG id: COG4680

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HigB mRNA interferase family [H]

Homologues:

Organism=Escherichia coli, GI1789465, Length=104, Percent_Identity=99.0384615384615, Blast_Score=214, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018669 [H]

Pfam domain/function: PF09907 DUF2136 [H]

EC number: NA

Molecular weight: Translated: 12133; Mature: 12133

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLITQKALKDAAEKYPQHKTELVALGNMIAKGYFKKPESLKAVFPSLDNFKYLDKHYVF
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEECCCEEEE
NVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKGKK
ECCCCCEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MHLITQKALKDAAEKYPQHKTELVALGNMIAKGYFKKPESLKAVFPSLDNFKYLDKHYVF
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEECCCEEEE
NVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKGKK
ECCCCCEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]