| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yghU [H]
Identifier: 82545273
GI number: 82545273
Start: 2875713
End: 2876627
Strand: Reverse
Name: yghU [H]
Synonym: SBO_2874
Alternate gene names: 82545273
Gene position: 2876627-2875713 (Counterclockwise)
Preceding gene: 82545275
Following gene: 82545262
Centisome position: 63.64
GC content: 53.11
Gene sequence:
>915_bases GTGACCTGCCACACTGCTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGT CTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTCCGACGCATGAAAAAACGC TGCCCGTTGGCAAACACCCATTGCAACTTTATTCGCTGGGAACGCCGAACGGTCAGAAAGTAACGATTATGCTTGAGGAG CTGCTGGCGCTGGGCGTTACTGGTGCAGAGTACGACGCCTGGCTGATTCGTATTGGCGATGGCGATCAATTCTCCAGCGG CTTTGTCGAAGTGAACCCAAACTCGAAGATCCCGGCGCTGCGCGATCATACGCATAATCCGCCGATCTGTGTGTTTGAAT CTGGTTCGATCCTGCTTTATCTGGCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATG AACTGGCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCATTACGCACCGGTAAA GATTGAGTACGCCATCAACCGCTTTACCATGGAAGCCAAACGTCTGCTCGACGTGCTGGATAAGCAACTGGCGCAGCATA AGTTTGTTGCGGGCGATGAGTACACCATTGCGGATATGGCGATTTGGCCGTGGTTTGGCAACGTGGTGTTAGGTGGTGTG TATGATGCCGCTGAGTTTCTTGATGCGGGCAGTTATAAGCATGTACAACGCTGGGCGAAAGAAGTAGGCGAACGTCCGGC GGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATT TCGAGACGAATACGGAAGATAAGCGTCAGGGGTAA
Upstream 100 bases:
>100_bases ACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAA ATTCACATTCTGTACAGCAA
Downstream 100 bases:
>100_bases GGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGA TGCGACGCTGCCGCGTCTTA
Product: glutathione S-transferase YghU
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MTCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHPLQLYSLGTPNGQKVTIMLEE LLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETM NWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGV YDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTEDKRQG
Sequences:
>Translated_304_residues MTCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHPLQLYSLGTPNGQKVTIMLEE LLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETM NWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGV YDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTEDKRQG >Mature_303_residues TCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHPLQLYSLGTPNGQKVTIMLEEL LALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMN WLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGVY DAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTEDKRQG
Specific function: Unknown
COG id: COG0625
COG function: function code O; Glutathione S-transferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GST N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI87082195, Length=288, Percent_Identity=99.6527777777778, Blast_Score=597, Evalue=1e-172, Organism=Escherichia coli, GI1788640, Length=214, Percent_Identity=41.1214953271028, Blast_Score=153, Evalue=1e-38, Organism=Escherichia coli, GI87081789, Length=174, Percent_Identity=28.735632183908, Blast_Score=70, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324100, Length=257, Percent_Identity=29.9610894941634, Blast_Score=100, Evalue=2e-22, Organism=Drosophila melanogaster, GI28571670, Length=178, Percent_Identity=26.9662921348315, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI17864592, Length=201, Percent_Identity=27.8606965174129, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010987 - InterPro: IPR004045 - InterPro: IPR017933 - InterPro: IPR004046 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]
EC number: NA
Molecular weight: Translated: 34150; Mature: 34019
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP CCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCC LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPAL EEEEECCCCCCCEEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCHH RDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGGFGHF HCCCCCCCEEEECCCCEEEEEEHHCCCCCCHHHHHHHHHHEEEEEECCCCCHHCCCHHHH YHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGV EEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHCCH YDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTED HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCH KRQG HCCC >Mature Secondary Structure TCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP CCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCC LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPAL EEEEECCCCCCCEEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCHH RDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGGFGHF HCCCCCCCEEEECCCCEEEEEEHHCCCCCCHHHHHHHHHHEEEEEECCCCCHHCCCHHHH YHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGV EEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHCCH YDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTED HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCH KRQG HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]