Definition Shigella boydii Sb227, complete genome.
Accession NC_007613
Length 4,519,823

Click here to switch to the map view.

The map label for this gene is yghU [H]

Identifier: 82545273

GI number: 82545273

Start: 2875713

End: 2876627

Strand: Reverse

Name: yghU [H]

Synonym: SBO_2874

Alternate gene names: 82545273

Gene position: 2876627-2875713 (Counterclockwise)

Preceding gene: 82545275

Following gene: 82545262

Centisome position: 63.64

GC content: 53.11

Gene sequence:

>915_bases
GTGACCTGCCACACTGCTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGT
CTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTCCGACGCATGAAAAAACGC
TGCCCGTTGGCAAACACCCATTGCAACTTTATTCGCTGGGAACGCCGAACGGTCAGAAAGTAACGATTATGCTTGAGGAG
CTGCTGGCGCTGGGCGTTACTGGTGCAGAGTACGACGCCTGGCTGATTCGTATTGGCGATGGCGATCAATTCTCCAGCGG
CTTTGTCGAAGTGAACCCAAACTCGAAGATCCCGGCGCTGCGCGATCATACGCATAATCCGCCGATCTGTGTGTTTGAAT
CTGGTTCGATCCTGCTTTATCTGGCGGAGAAATTTGGCTACTTCCTGCCGCAGGATTTGGCAAAGCGTACTGAAACGATG
AACTGGCTGTTCTGGTTACAGGGCGCGGCACCGTTCCTCGGCGGTGGTTTTGGTCACTTTTACCATTACGCACCGGTAAA
GATTGAGTACGCCATCAACCGCTTTACCATGGAAGCCAAACGTCTGCTCGACGTGCTGGATAAGCAACTGGCGCAGCATA
AGTTTGTTGCGGGCGATGAGTACACCATTGCGGATATGGCGATTTGGCCGTGGTTTGGCAACGTGGTGTTAGGTGGTGTG
TATGATGCCGCTGAGTTTCTTGATGCGGGCAGTTATAAGCATGTACAACGCTGGGCGAAAGAAGTAGGCGAACGTCCGGC
GGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATT
TCGAGACGAATACGGAAGATAAGCGTCAGGGGTAA

Upstream 100 bases:

>100_bases
ACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAA
ATTCACATTCTGTACAGCAA

Downstream 100 bases:

>100_bases
GGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGA
TGCGACGCTGCCGCGTCTTA

Product: glutathione S-transferase YghU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHPLQLYSLGTPNGQKVTIMLEE
LLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETM
NWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGV
YDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTEDKRQG

Sequences:

>Translated_304_residues
MTCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHPLQLYSLGTPNGQKVTIMLEE
LLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETM
NWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGV
YDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTEDKRQG
>Mature_303_residues
TCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHPLQLYSLGTPNGQKVTIMLEEL
LALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMN
WLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGVY
DAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTEDKRQG

Specific function: Unknown

COG id: COG0625

COG function: function code O; Glutathione S-transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GST N-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI87082195, Length=288, Percent_Identity=99.6527777777778, Blast_Score=597, Evalue=1e-172,
Organism=Escherichia coli, GI1788640, Length=214, Percent_Identity=41.1214953271028, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI87081789, Length=174, Percent_Identity=28.735632183908, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324100, Length=257, Percent_Identity=29.9610894941634, Blast_Score=100, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28571670, Length=178, Percent_Identity=26.9662921348315, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17864592, Length=201, Percent_Identity=27.8606965174129, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010987
- InterPro:   IPR004045
- InterPro:   IPR017933
- InterPro:   IPR004046
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]

EC number: NA

Molecular weight: Translated: 34150; Mature: 34019

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP
CCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCC
LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPAL
EEEEECCCCCCCEEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCHH
RDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGGFGHF
HCCCCCCCEEEECCCCEEEEEEHHCCCCCCHHHHHHHHHHEEEEEECCCCCHHCCCHHHH
YHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGV
EEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHCCH
YDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTED
HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCH
KRQG
HCCC
>Mature Secondary Structure 
TCHTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP
CCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCC
LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPAL
EEEEECCCCCCCEEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCHH
RDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGGFGHF
HCCCCCCCEEEECCCCEEEEEEHHCCCCCCHHHHHHHHHHEEEEEECCCCCHHCCCHHHH
YHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGV
EEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHCCH
YDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDASDFETNTED
HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCH
KRQG
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]