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The map label for this gene is ygbD [H]

Identifier: 82545214

GI number: 82545214

Start: 2816909

End: 2817934

Strand: Reverse

Name: ygbD [H]

Synonym: SBO_2807

Alternate gene names: 82545214

Gene position: 2817934-2816909 (Counterclockwise)

Preceding gene: 82545215

Following gene: 82545210

Centisome position: 62.35

GC content: 53.31

Gene sequence:

>1026_bases
ATGAGTAACGGCATTGTGATCATCGGTTCGGGCTTCGCCGCCCGCCAACTGGTGAAAAATATTCGCAAACAGGACGCCAC
TATTCCATTAACCCTGATTGCCGCCGACAGCATGGATGAGTACAACAAACCTGACCTCAGCCATGTTATCAGTCAGGGGC
AACGTGCCGATGACCTTACCCGCCAGACGGCGGGTGAATTTGCCGAGCAGTTTAATCTGCACCTGTTTCCACAAACCTGG
GTGACGGATATCGATGCCGAAGCCCGTGTGGTGAAAAGCCAGAATAATCAGTGGCAATACGACAAGCTAGTACTGGCAAC
CGGTGCCAGTGCCTTTGTCCCGCCTGTGCCTGGGCGTGAGTTAATGCTGACGTTAAATAGTCAGCAAGAGTATCGCGCCT
GTGAAACGCAACTGCGGGATGCCCGACGCGTGTTGATTGTTGGCGGTGGTTTGATTGGTAGCGAACTGGCGATGGATTTT
TGTCGTGCAGGCAAAGCGGTCACGCTAATCGACAACGCTGCCAGTATTCTGGCGTCGTTAATGCCACCGGAAGTAAGCAG
CCGCTTGCAGCATCGGTTGACGGAGATGGGCGTTTATCTGCTGTTGAAATCTCAGTTACAGGGGCTGGAAAAAACGGATT
CTGGCATTCTGGCAACGCTGGACCACCAGCGTAGTATCGAAGTGGATGCGGTAATTGCCGCCACCGGACTGCGCCCGGAA
ACAGCCCTGGCACGACGCGCCGGGCTGACGATTAATCGCGGCGTTTGCGTCGATAGTTATCTGCAAACCAGTAATGACGA
TATTTATGCGCTGGGCGATTACGCGGAAATCAACGGTCAGGTACTGCCATTCCTGCAGCCGATTCAACTTAGCGCGATGG
TGCTGGCAAAAAATCTTCTCGGCAATAACACGCCGCTGAAACTACCGACGATGCTGGTGAAAATCAAAACGCCGGAATTA
CCGCTGCATCTGGCAGGTGAAACCCAGCGTCAGGATTTACGCTGGCAAATTAATACCGAACGCTAG

Upstream 100 bases:

>100_bases
TTGCGCCAGGAACGCCGTGGAGTGAAGTCCCGGATAACTTCCTCTGCCCGGAATGCTCCCTCGGCAAAGACGTCTTTGAA
GAACTGGCATCGGAGGCAAA

Downstream 100 bases:

>100_bases
GGAATGGTGGCTCGCGGTGTTGACGATGCTGACCAGCTTCGCGCCTTTGTGGTCAGTGAGGATCGGATGAAAGAGGCATT
TGGATTGTTGAAAACATTGC

Product: nitric oxide reductase

Products: NAD; reduced flavorubredoxin; H2O [C]

Alternate protein names: Flavorubredoxin reductase; FlRd-reductase; FlavoRb reductase [H]

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTAGEFAEQFNLHLFPQTW
VTDIDAEARVVKSQNNQWQYDKLVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDF
CRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVYLLLKSQLQGLEKTDSGILATLDHQRSIEVDAVIAATGLRPE
TALARRAGLTINRGVCVDSYLQTSNDDIYALGDYAEINGQVLPFLQPIQLSAMVLAKNLLGNNTPLKLPTMLVKIKTPEL
PLHLAGETQRQDLRWQINTER

Sequences:

>Translated_341_residues
MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTAGEFAEQFNLHLFPQTW
VTDIDAEARVVKSQNNQWQYDKLVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDF
CRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVYLLLKSQLQGLEKTDSGILATLDHQRSIEVDAVIAATGLRPE
TALARRAGLTINRGVCVDSYLQTSNDDIYALGDYAEINGQVLPFLQPIQLSAMVLAKNLLGNNTPLKLPTMLVKIKTPEL
PLHLAGETQRQDLRWQINTER
>Mature_340_residues
SNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTAGEFAEQFNLHLFPQTWV
TDIDAEARVVKSQNNQWQYDKLVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDFC
RAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVYLLLKSQLQGLEKTDSGILATLDHQRSIEVDAVIAATGLRPET
ALARRAGLTINRGVCVDSYLQTSNDDIYALGDYAEINGQVLPFLQPIQLSAMVLAKNLLGNNTPLKLPTMLVKIKTPELP
LHLAGETQRQDLRWQINTER

Specific function: One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase [H]

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI226437568, Length=315, Percent_Identity=21.5873015873016, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI65787454, Length=321, Percent_Identity=21.183800623053, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI21389617, Length=321, Percent_Identity=21.183800623053, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4757732, Length=209, Percent_Identity=26.7942583732057, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI22202629, Length=209, Percent_Identity=26.7942583732057, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1789065, Length=341, Percent_Identity=97.9472140762463, Blast_Score=682, Evalue=0.0,
Organism=Escherichia coli, GI1788892, Length=274, Percent_Identity=28.1021897810219, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1789765, Length=323, Percent_Identity=25.3869969040248, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787352, Length=277, Percent_Identity=28.8808664259928, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17559934, Length=276, Percent_Identity=25.7246376811594, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24639257, Length=322, Percent_Identity=23.2919254658385, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281359715, Length=322, Percent_Identity=23.2919254658385, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281359713, Length=322, Percent_Identity=23.2919254658385, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24639250, Length=322, Percent_Identity=23.2919254658385, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18543267, Length=322, Percent_Identity=23.2919254658385, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24639252, Length=322, Percent_Identity=23.2919254658385, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24585130, Length=279, Percent_Identity=22.2222222222222, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: NA

Molecular weight: Translated: 37496; Mature: 37364

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLT
CCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHH
RQTAGEFAEQFNLHLFPQTWVTDIDAEARVVKSQNNQWQYDKLVLATGASAFVPPVPGRE
HHHHHHHHHHCCCEECCCHHCCCCCCCHHEECCCCCCEEEEEEEEEECCCCCCCCCCCCE
LMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASL
EEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
MPPEVSSRLQHRLTEMGVYLLLKSQLQGLEKTDSGILATLDHQRSIEVDAVIAATGLRPE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCH
TALARRAGLTINRGVCVDSYLQTSNDDIYALGDYAEINGQVLPFLQPIQLSAMVLAKNLL
HHHHHHCCCEEECCCEEHHHHHCCCCCEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHH
GNNTPLKLPTMLVKIKTPELPLHLAGETQRQDLRWQINTER
CCCCCEEECEEEEEEECCCCCEEECCCCCCCCCEEEEECCC
>Mature Secondary Structure 
SNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLT
CCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHH
RQTAGEFAEQFNLHLFPQTWVTDIDAEARVVKSQNNQWQYDKLVLATGASAFVPPVPGRE
HHHHHHHHHHCCCEECCCHHCCCCCCCHHEECCCCCCEEEEEEEEEECCCCCCCCCCCCE
LMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASL
EEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
MPPEVSSRLQHRLTEMGVYLLLKSQLQGLEKTDSGILATLDHQRSIEVDAVIAATGLRPE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCH
TALARRAGLTINRGVCVDSYLQTSNDDIYALGDYAEINGQVLPFLQPIQLSAMVLAKNLL
HHHHHHCCCEEECCCEEHHHHHCCCCCEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHH
GNNTPLKLPTMLVKIKTPELPLHLAGETQRQDLRWQINTER
CCCCCEEECEEEEEEECCCCCEEECCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; oxidized flavorubredoxin; O2 [C]

Specific reaction: NADH + oxidized flavorubredoxin + O2 = NAD + reduced flavorubredoxin + H2O [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA