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The map label for this gene is yphD [H]

Identifier: 82544996

GI number: 82544996

Start: 2572312

End: 2573310

Strand: Reverse

Name: yphD [H]

Synonym: SBO_2572

Alternate gene names: 82544996

Gene position: 2573310-2572312 (Counterclockwise)

Preceding gene: 82544997

Following gene: 82544995

Centisome position: 56.93

GC content: 55.36

Gene sequence:

>999_bases
ATGTCTGCTTCGTCATTATCATTGCCGCTGGGCAAGAGCGTCTCGCTCAAACAATTTGTCAGTCGCCATATTAATGAGAT
CGGTTTGCTGGTGGTAATCGCCATTCTTTATCTGGTCTTCTCCCTGAATGCGCCTGGCTTTATCTCATTGAATAACCAGA
TGAACGTGCTTCGCGATGCTGCCACCATCGGGATCGCCGCCTGGGCAATGACGCTGATTATTATCTCCGGTGAAATTGAT
GTCAGCGTTGGACCGATGGTGGCTTTTGTCTCGGTGTGCCTGGCATTTTTGCTGCAATTTGAAGTTCCGTTGGCGATTGC
TTGTCTGCTGGTGTTGCTGTTAGGCGCGCTGATGGGAACGCTCGCCGGGGTGCTGCGCGGCGTGTTTAACGTGCCCAGTT
TCGTTGCCACACTGGGGCTGTGGAGCGCCCTGCGCGGAATGGGGCTGTTTATGACCAACGCACTGCCAGTGCCGATTGAC
GAAAACGAGGTGCTGGACTGGCTGGGCGGACAATTTCTCGGTGTGCCAGTATCCGCGCTGATCATGATGGTGTTGTTTGC
GCTGTTTGTGTTCATTAGCCGAAAAACCGCCTTCGGGCGCTCGGTTTTTGCCGTTGGCGGTAATGCCACGGCGGCGCAGT
TGTGCGGTATTAACGTTCGTCGAGTGCGCATTCTTATCTTTACCCTTTCGGGATTATTAGCGGCGGTGACCGGCATTTTG
CTGGCGGCACGCCTCGGTTCCGGTAACGCAGGTGCCGCAAACGGTCTGGAGTTTGACGTCATCGCCGCGGTCGTGGTCGG
CGGTACGGCACTTTCCGGCGGTCGCGGTTCCCTGTTCGGTACATTGCTTGGTGTGCTGGTGATTACGCTAATCGGTAACG
GTCTGGTGCTGCTCGGTATTAACTCCTTTTTCCAGCAGGTGGTACGCGGCGTCATCATCGTGGTGGCGGTGCTGGCGAAT
ATCTTGCTGACCCAGCGAAGCAGTAAAGCGAAACGCTAA

Upstream 100 bases:

>100_bases
CGGTACGTTCTCGCAGGAGTTTCACTCGCCGGTCAATGTGGATGAGCTGATGTCCGCCATTCTGTCTGTGCACTGATGAA
TTTTACCGAGGAACCTGAAG

Downstream 100 bases:

>100_bases
ACCTTAACGCCCCTGGCGCGGGTGCGGCAGGGATGAAAATTAATCGTATTGTTAATGAGGGATTTATGAAAACGATGCTG
GCAGCTTATTTACCAGGAAA

Product: transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSASSLSLPLGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEID
VSVGPMVAFVSVCLAFLLQFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPID
ENEVLDWLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGIL
LAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLAN
ILLTQRSSKAKR

Sequences:

>Translated_332_residues
MSASSLSLPLGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEID
VSVGPMVAFVSVCLAFLLQFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPID
ENEVLDWLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGIL
LAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLAN
ILLTQRSSKAKR
>Mature_331_residues
SASSLSLPLGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDV
SVGPMVAFVSVCLAFLLQFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDE
NEVLDWLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILL
AARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANI
LLTQRSSKAKR

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=332, Percent_Identity=98.7951807228916, Blast_Score=623, Evalue=1e-180,
Organism=Escherichia coli, GI1790191, Length=314, Percent_Identity=39.171974522293, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI87082395, Length=287, Percent_Identity=36.5853658536585, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI145693152, Length=311, Percent_Identity=32.1543408360129, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=41.304347826087, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790524, Length=304, Percent_Identity=29.2763157894737, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787793, Length=275, Percent_Identity=34.1818181818182, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI145693214, Length=257, Percent_Identity=36.1867704280156, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1787794, Length=318, Percent_Identity=29.2452830188679, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=31.6265060240964, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34491; Mature: 34360

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASSLSLPLGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
ATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAIACLLVLLLGALMGT
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSAL
HHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHCCCEECCCHHHH
IMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGIL
HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGI
HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEH
NSFFQQVVRGVIIVVAVLANILLTQRSSKAKR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SASSLSLPLGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
ATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLAIACLLVLLLGALMGT
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSAL
HHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHCCCEECCCHHHH
IMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGIL
HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGI
HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEH
NSFFQQVVRGVIIVVAVLANILLTQRSSKAKR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]