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The map label for this gene is ycaN [H]

Identifier: 82544636

GI number: 82544636

Start: 2162391

End: 2163299

Strand: Reverse

Name: ycaN [H]

Synonym: SBO_2184

Alternate gene names: 82544636

Gene position: 2163299-2162391 (Counterclockwise)

Preceding gene: 82544638

Following gene: 82544635

Centisome position: 47.86

GC content: 46.86

Gene sequence:

>909_bases
ATGCGGATGAATATGTCTGACTTTGCCACTTTCTTTGCCGTGGCCCGTAATCAAAGCTTTCGTGCAGCGGGCGATGAGTT
AGGCTTATCCTCGTCCGCCATTAGCCATAGTATTAAAACACTGGAACAACGTCTTAAAATTCGCTTATTCAATCGGACAA
CCCGAAGCGTATCGTTAACGGAAGCGGGTTCTAATCTCTATGAACGATTGCGCCCAGCTTTCGACGAAATTCAGATCATG
TTAGATGAGATGAATGATTTTCGTCTGACACCGACAGGAACGCTCAAAATCAATGACGCCCGGGTAGCTGCACGTATATT
TTTAATGCCTTTACTGGTTGGTTTCACACGTGAATATCCTGATATTAAAGTCGAGCTCACAACTGACGACTCTCTTGTCG
ATATCGTCCAACAGGGCTTTGACGCTGGCGTTCGACTTAGTGGCATCGTCGAAAAAGATATGATCAGCGTGGCGATCGGC
CCGCCAGTGAAATTATGTGTAGCAGCAACGCCAGAGTACTTTGCAAGATATGGCAAACCCCGCCATCCTCATGATCTGCT
TAATCATCAATGTGTTGTTTTTCGTTATCCCAGCGGCAAACCTTTCCACTGGCAATTTGCAAAGGAGCTGGAAATTGCTG
TCGCAGGAAATATCATTCTGGATGATGTTGATGCTGAACTGGAGGCCGTTTTGATGGGTGCTGGTATCGGGTATCTGCTC
TATGAACAGATCAAGGAGTACCTTGATACTGGTCGTTTAGAATGTGTACTGGGAGACTGGAGCACAGAGCGTCCAGGCTT
CCAGATCTATTATCCAAACCGCCAGTATATGTCCTGCGGCTTGCGCGCATTTCTCGATTATGTAAAAACGGGTCAGATCA
GCCAGAGTCAGCGTCACCGACCACAATAA

Upstream 100 bases:

>100_bases
TAATTTTACCTCCACGTTAAGTTCTGGAGCGCACTTTACGCAGGCGGCATAATCCTGTAAACGTGATGATTCAGGATGAG
TTAATGAAGGATTTTCACTA

Downstream 100 bases:

>100_bases
TTATTTACTATTCGCTTTACGCGCCAGCAGCGGGAAAATCAGTCCTAATCCTACCAGCACAAACGGCGTTGCAACATTCA
GCGCCAACTGGAAGGTCCAC

Product: transcriptional regulator LYSR-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIM
LDEMNDFRLTPTGTLKINDARVAARIFLMPLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIG
PPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLL
YEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQYMSCGLRAFLDYVKTGQISQSQRHRPQ

Sequences:

>Translated_302_residues
MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIM
LDEMNDFRLTPTGTLKINDARVAARIFLMPLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIG
PPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLL
YEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQYMSCGLRAFLDYVKTGQISQSQRHRPQ
>Mature_302_residues
MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIM
LDEMNDFRLTPTGTLKINDARVAARIFLMPLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIG
PPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLL
YEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQYMSCGLRAFLDYVKTGQISQSQRHRPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=98.3443708609272, Blast_Score=616, Evalue=1e-178,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=33.9041095890411, Blast_Score=204, Evalue=6e-54,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=28.7162162162162, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=28.3737024221453, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789639, Length=304, Percent_Identity=27.3026315789474, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI145693193, Length=282, Percent_Identity=28.7234042553192, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=24.5614035087719, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788706, Length=295, Percent_Identity=27.7966101694915, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=29.2929292929293, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789173, Length=305, Percent_Identity=23.2786885245902, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=34.1463414634146, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693105, Length=161, Percent_Identity=29.8136645962733, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=140, Percent_Identity=25.7142857142857, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34215; Mature: 34215

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCEEEEH
EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINDARVAARIFLMPLLVGFTREYP
HHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP
CEEEEEECCCHHHHHHHHCCCCCCEEECCHHHHEEEEECCCCEEEEEECCHHHHHHCCCC
RHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLL
CCCHHHHCCCEEEEECCCCCCEEEEHHHHEEEEEECCEEEECCCHHHHHHHHHCCHHHHH
YEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQYMSCGLRAFLDYVKTGQISQSQRHR
HHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PQ
CC
>Mature Secondary Structure
MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCEEEEH
EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINDARVAARIFLMPLLVGFTREYP
HHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP
CEEEEEECCCHHHHHHHHCCCCCCEEECCHHHHEEEEECCCCEEEEEECCHHHHHHCCCC
RHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNIILDDVDAELEAVLMGAGIGYLL
CCCHHHHCCCEEEEECCCCCCEEEEHHHHEEEEEECCEEEECCCHHHHHHHHHCCHHHHH
YEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQYMSCGLRAFLDYVKTGQISQSQRHR
HHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]