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The map label for this gene is rtn [H]

Identifier: 82544605

GI number: 82544605

Start: 2122734

End: 2124290

Strand: Reverse

Name: rtn [H]

Synonym: SBO_2148

Alternate gene names: 82544605

Gene position: 2124290-2122734 (Counterclockwise)

Preceding gene: 82544606

Following gene: 161984914

Centisome position: 47.0

GC content: 50.48

Gene sequence:

>1557_bases
ATGTTCATACGCGCTCCCAATTCTGGACGTAAGCTCCTGCTTACCTGCATTGTAGCAGGCGTGATGATTGCGATACTGGT
TAGCTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTATCGACGTACAAAAGTATC
TCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTTCAGCCGCTGACCTTAGATACCTGCCAGCAGGCTAAC
CCCGAACTGACCGCTCGCGCGGCGTTTAGCATGAATGTCCGTACGTTTGTGCTGGTGAAAGATAAAAAAACATTCTGTTC
ATCTGCGACTGGTGAGATGGACATTCCACTCAATGAATTGATTCCGGCGCTCGACATTAATAAAAACGTCGATATGGCGA
TCTTACCCGGCACGCCGATGGTGCCGAACAAACCCGCAATCGTCATCTGGTATCGCAACCCTTTGCTGAAAAATAGCGGT
GTGTTTGCCGCTCTGAATCTCAACCTGACGCCTTCTCTCTTTTATAGTTCACGGCAGGAAGATTACGATGGCGTCGCCCT
CATTATTGGCAATACTGCGCTATCTACCTTTTCTTCACGTTTGATGAACGTTAATGAATTAACCGACATGCCGGTCCGTG
AAACTAAAATTGCGGGCATTCCTCTGACCGTTCGGCTTTATGCGGATGACTGGACATGGAACGATGTGTGGTACGCATTT
TTACTGGGCGGCATGAGTGGAACTGTCGTTGGCCTGCTTTGCTATTACCTGATGAGCGTACGTATGCGCCCCGACAGAGA
AATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGGGTAACGG
GCCTGGAAGTACTGCTACGCTGGCGGCATCCTGTAGCGGGAGAAATTCCCCCGGATGCCTTCATTAACTTTGCCGAATCG
CAAAAGATGATTGTGCCGCTGACTCAGCACCTGTTTGAGTTAATTGCCCGCGATGCCGCAGAATTAGAAAAAGTACTGCC
GGTAGGCGTCAAATTTGGCATTAACATTGCGCCGGACCATCTGCACAGCGAAAGCTTTAAAGCAGATATCCAGAAACTGC
TCACTTCCCTGCCCGCACACCATTTCCAGATTGTGCTGGAAATTACCGAGCGCGATATGCTGAAAGAGCAAGAAGCCACA
CAACTCTTCGCCTGGCTGCACTCGGTCGGCGTAGAAATTGCTATTGATGACTTCGGCACCGGGCACAGCGCGCTTATCTA
TCTTGAGCGTTTTACGCTCGATTATCTGAAAATTGACCGTGGATTTATCAACGCCATCGGTACGGAAACGATCACTTCAC
CCGTACTTGACGCGGTGCTGACGCTGGCGAAACGCCTCAATATGCTGACGGTTGCTGAAGGGGGCGAAACGCCGGAACAG
GCGCGATGGCTAAGCGAACCCGGCGTTAATTTCATGCAAGGCTACTGGATTAGTCGCCCGTTACCGCTGGACGATTTTGT
TCGCTGGCTGAAGAAACCGTATACGCCGCAGTGGTAA

Upstream 100 bases:

>100_bases
TTCATCAGAGAAAATGATGTTTCCGCGTCTTGATCCAGGCTATAGTCCGGTCATTGTTATCTTTTAAATGTTGTCGTAAT
TTCAGGAAATTAACGGAATC

Downstream 100 bases:

>100_bases
GGTGTGCTTACGTCCCTTATTATTCATAGTGAAAGCATGCCGGATTGCGGCTAATGATGAGTAAAAGGAAATCCGTTGCA
GATGATTGTGCGCATACTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQAN
PELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG
VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAF
LLGGMSGTVVGLLCYYLMSVRMRPDREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAES
QKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEAT
QLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGGETPEQ
ARWLSEPGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW

Sequences:

>Translated_518_residues
MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQAN
PELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG
VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAF
LLGGMSGTVVGLLCYYLMSVRMRPDREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAES
QKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEAT
QLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGGETPEQ
ARWLSEPGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW
>Mature_518_residues
MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQAN
PELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG
VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAF
LLGGMSGTVVGLLCYYLMSVRMRPDREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAES
QKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEAT
QLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGGETPEQ
ARWLSEPGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW

Specific function: Involved in resistance to phages N4 and lambda [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1788502, Length=518, Percent_Identity=99.034749034749, Blast_Score=1055, Evalue=0.0,
Organism=Escherichia coli, GI87081980, Length=518, Percent_Identity=28.7644787644788, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=38.8888888888889, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=36.4372469635627, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI87081743, Length=270, Percent_Identity=31.4814814814815, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=29.8804780876494, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787541, Length=249, Percent_Identity=30.1204819277108, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI87081921, Length=241, Percent_Identity=30.2904564315353, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI226510982, Length=253, Percent_Identity=30.8300395256917, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=28.2786885245902, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=243, Percent_Identity=29.6296296296296, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1787055, Length=250, Percent_Identity=28.8, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787410, Length=226, Percent_Identity=24.7787610619469, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 58498; Mature: 58498

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLIIDVQKYLDTYFAD
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHEEEEHHHHHHHHHHH
LKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNEL
HHHHHHHCCCCCHHHHHCCCCCEEEEEEEEECCEEEEEEECCHHHHCCCCCCCCCCHHHC
IPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQE
CCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHCCCCC
DYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAF
CCCCEEEEECCHHHHHHHHHHCCHHHHCCCCCCCCEECCCCEEEEEEECCCCCHHHHHHH
LLGGMSGTVVGLLCYYLMSVRMRPDREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLR
HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHH
WRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDH
HCCCCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEECCEECCHH
LHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGT
HCHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
GHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGGETPEQ
CCEEEEEEEHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHH
ARWLSEPGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW
HHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLIIDVQKYLDTYFAD
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHEEEEHHHHHHHHHHH
LKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDKKTFCSSATGEMDIPLNEL
HHHHHHHCCCCCHHHHHCCCCCEEEEEEEEECCEEEEEEECCHHHHCCCCCCCCCCHHHC
IPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSGVFAALNLNLTPSLFYSSRQE
CCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHCCCCC
DYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAF
CCCCEEEEECCHHHHHHHHHHCCHHHHCCCCCCCCEECCCCEEEEEEECCCCCHHHHHHH
LLGGMSGTVVGLLCYYLMSVRMRPDREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLR
HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHH
WRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGVKFGINIAPDH
HCCCCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEECCEECCHH
LHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEATQLFAWLHSVGVEIAIDDFGT
HCHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
GHSALIYLERFTLDYLKIDRGFINAIGTETITSPVLDAVLTLAKRLNMLTVAEGGETPEQ
CCEEEEEEEHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHH
ARWLSEPGVNFMQGYWISRPLPLDDFVRWLKKPYTPQW
HHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 9079933 [H]