| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yejM [H]
Identifier: 82544594
GI number: 82544594
Start: 2108887
End: 2110647
Strand: Reverse
Name: yejM [H]
Synonym: SBO_2136
Alternate gene names: 82544594
Gene position: 2110647-2108887 (Counterclockwise)
Preceding gene: 82544595
Following gene: 82544593
Centisome position: 46.7
GC content: 52.36
Gene sequence:
>1761_bases ATGGTAACTCATCGTCAGCGCTACCGTGAAAAAGTCTCCCAGATGGTCAGTTGGGGGCACTGGTTTGCACTGTTCAATAT TCTGCTTTCGCTCGTCATTGGCAGCCGTTACCTGTTTATCGCCGACTGGCCGACAACGCTTGCTGGTCGCATTTATTCCT ACGTAAGCATTATCGGCCATTTCAGCTTCCTGGTGTTCGCCACCTACTTGCTGATCCTCTTCCCGCTGACCTTTATCGTC GGCTCCCAGAGGCTGATGAGGTTTTTGTCCGTCATTCTGGCAACGGCGGGAATGACGCTATTACTGATCGATAGCGAAGT CTTTACTCGTTTCCATCTCCATCTTAATCCCATCGTCTGGCAGTTGGTTATCAACCCAGACGAAAATGAGATGGCGCGCG ACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTG CGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCGCCTTTATCGCCTCGCATGTGGT GTATATCTGGGCCGATGCCAACTTCTATCGCCCGATCACCATGCAGCGCGCTAACCTGCCGCTTTCGTACCCGATGACGG CGCGACGTTTCCTTGAGAAGCATGGCCTGCTTGATGCGCAGGAGTATCAACGCCGTCTTATTGAGCAAGGTAATCCAGAC GCCGTTTCCGTACAGTATCCGTTAAGCGAACTGCGCTATCGCGATATGGGCACCGGGCAGAATGTGCTGTTGATTACTGT CAATGGCCTGAACTACTCACGCTTCGAGAAGCAGATGCCTGCGCTGGCAGGTTTTGCTGAGCAAAATATTTCGTTCACGC GCCATATGAGCTCCGGCAACACTACAAACAACGGCATCTTTGGCCTGTTCTATGGCATCTCGCCGAGCTATATGGACGGC ATTCTGTCGACCCGTACCCCTGCGGCGTTAATTACTGCGCTTAATCAGCAAGGCTATCAGCTGGGATTATTCTCGTCAGA TGGCTTTACCAGTCCGCTGTATCGCCAGGCATTGTTGTCAGATTTCTCGATGCCGAGCGTACGCCCCCAATCCGACGAGC AGACCGCCACGCAGTGGATCAACTGGCTGGGCCGCTACGCACAAGAAGATAACCGCTGGTTCTCGTGGGTCTCTTTCAAT GGCACTAACATTGACGACAGCAATCAGCAGGCATTTGCACGGAAATATAGCCGGGCGGCAGGCAATGTCGATGACCAGAT CAACCGCGTGCTCAATGCACTGCTTGATTCTGGCAAACTGGACAATACGGTTGTGATTATCACTGCCGGTCGGGGTATTC CGCTGAGCGAAGACGAAGAAACCTTTGACTGGTCCCACGGTCATCTGCAGGTGCCATTAGTGATTCACTGGCCAGGCACG CCGGCGCAGCGTATTAATGCGCTGACTGATCATACCGATCTGATGACGACGCTGATGCAACGCCTGCTACATGTCAGCAC ACCTGCCAGCGAATATTCGCAAGGTCAGGATTTGTTCAACCCTCAACGCCGTCATTACTGGGTCACTGCAGCGGATAACG ATACGCTGGCAATTACCACCCCGAAAAAGACGCTGGTGCTGAACAATAACGGTAAATACCGCACTTACAACTTACGTGGT GAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTG A
Upstream 100 bases:
>100_bases GCCCCGGCCCAACGCCAGGCAATTGCCAACTCTTTTGCCCGCGCCTTACAGTCCTCTATCAACGAAGACAAAGCGCACTA AGGGAAACAGATAACAGGTT
Downstream 100 bases:
>100_bases TTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAC GTAGCGCAGCCTGGTAGCGC
Product: sulfatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 586; Mature: 586
Protein sequence:
>586_residues MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIV GSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPD AVSVQYPLSELRYRDMGTGQNVLLITVNGLNYSRFEKQMPALAGFAEQNISFTRHMSSGNTTNNGIFGLFYGISPSYMDG ILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRPQSDEQTATQWINWLGRYAQEDNRWFSWVSFN GTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALLDSGKLDNTVVIITAGRGIPLSEDEETFDWSHGHLQVPLVIHWPGT PAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRG ERVKDEKPQLSLLLQVLTDEKRFIAN
Sequences:
>Translated_586_residues MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIV GSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPD AVSVQYPLSELRYRDMGTGQNVLLITVNGLNYSRFEKQMPALAGFAEQNISFTRHMSSGNTTNNGIFGLFYGISPSYMDG ILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRPQSDEQTATQWINWLGRYAQEDNRWFSWVSFN GTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALLDSGKLDNTVVIITAGRGIPLSEDEETFDWSHGHLQVPLVIHWPGT PAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRG ERVKDEKPQLSLLLQVLTDEKRFIAN >Mature_586_residues MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIV GSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPD AVSVQYPLSELRYRDMGTGQNVLLITVNGLNYSRFEKQMPALAGFAEQNISFTRHMSSGNTTNNGIFGLFYGISPSYMDG ILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRPQSDEQTATQWINWLGRYAQEDNRWFSWVSFN GTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALLDSGKLDNTVVIITAGRGIPLSEDEETFDWSHGHLQVPLVIHWPGT PAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRG ERVKDEKPQLSLLLQVLTDEKRFIAN
Specific function: Unknown
COG id: COG3083
COG function: function code R; Predicted hydrolase of alkaline phosphatase superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0842 [H]
Homologues:
Organism=Escherichia coli, GI1788515, Length=586, Percent_Identity=99.1467576791809, Blast_Score=1192, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR012159 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 67234; Mature: 67234
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH FSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVW HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECHHHHHEEEEEECCEEE QLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKLRSLTRRRRFARPLAAFLFIA EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH FIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPD HHHHCEEEEEECCCEECCEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC AVSVQYPLSELRYRDMGTGQNVLLITVNGLNYSRFEKQMPALAGFAEQNISFTRHMSSGN EEEEECCHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC TTNNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLS CCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH DFSMPSVRPQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAA CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHC GNVDDQINRVLNALLDSGKLDNTVVIITAGRGIPLSEDEETFDWSHGHLQVPLVIHWPGT CCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC PAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITT CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEC PKKTLVLNNNGKYRTYNLRGERVKDEKPQLSLLLQVLTDEKRFIAN CCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWPTTLAGRIYSYVSIIGH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH FSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLLIDSEVFTRFHLHLNPIVW HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECHHHHHEEEEEECCEEE QLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKLRSLTRRRRFARPLAAFLFIA EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH FIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLDAQEYQRRLIEQGNPD HHHHCEEEEEECCCEECCEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCC AVSVQYPLSELRYRDMGTGQNVLLITVNGLNYSRFEKQMPALAGFAEQNISFTRHMSSGN EEEEECCHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC TTNNGIFGLFYGISPSYMDGILSTRTPAALITALNQQGYQLGLFSSDGFTSPLYRQALLS CCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH DFSMPSVRPQSDEQTATQWINWLGRYAQEDNRWFSWVSFNGTNIDDSNQQAFARKYSRAA CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHC GNVDDQINRVLNALLDSGKLDNTVVIITAGRGIPLSEDEETFDWSHGHLQVPLVIHWPGT CCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC PAQRINALTDHTDLMTTLMQRLLHVSTPASEYSQGQDLFNPQRRHYWVTAADNDTLAITT CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEC PKKTLVLNNNGKYRTYNLRGERVKDEKPQLSLLLQVLTDEKRFIAN CCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]